Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: isothermal titration calorimetry

Macromolecule Content

• Total Structure Weight: 17819.49 
• Atom Count: 1054 
• Residue Count: 151 
• Unique protein chains: 2

5YIQ

Crystal structure of AnkG LIR/LC3B complex

• DOI: 10.2210/pdb5YIQ/pdb

• Classification: PROTEIN BINDING
• Organism(s): Mus musculus, Rattus norvegicus
• Expression System: Escherichia coli


• Deposited: 2017-10-06 Released: 2018-05-23 
• Deposition Author(s): Li, J., Zhu, R., Chen, K., Zheng, H., Yuan, C., Zhang, H., Wang, C., Zhang, M.
• Funding Organization(s): Research Grants Council (RGC) 

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.6 Å
• R-Value Free: 0.259 
• R-Value Work: 0.217 

Literature

Potent and specific Atg8-targeting autophagy inhibitory peptides from giant ankyrins.

Li, J., Zhu, R., Chen, K., Zheng, H., Zhao, H., Yuan, C., Zhang, H., Wang, C., Zhang, M.

(2018) Nat. Chem. Biol. 14: 778-787

• PubMed: 29867141 
• Primary Citation of Related Structures:  
  5YIS, 5YIR, 5YIP

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Microtubule-associated proteins 1A/1B light chain 3B	A	125	Mus musculus	Mutation(s): 0  Gene Names: Map1lc3b (Map1alc3, Map1lc3)
Find proteins for Q9CQV6 (Mus musculus) Go to UniProtKB:  Q9CQV6

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
Ankyrin-3	D	26	Rattus norvegicus	Mutation(s): 0  Gene Names: Ank3
Find proteins for O70511 (Rattus norvegicus) Go to UniProtKB:  O70511

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
ZN	A, D	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.6 Å
• R-Value Free: 0.259 
• R-Value Work: 0.217 
• Space Group: P 6₅ 2 2

Unit Cell:

Length (Å)	Angle (°)
a = 64.553	α = 90.00
b = 64.553	β = 90.00
c = 155.461	γ = 120.00

Software Package:

Software Name	Purpose
PDB_EXTRACT	data extraction
REFMAC	refinement
SCALEPACK	data scaling
PHASER	phasing
DENZO	data collection

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2017-10-06 
• Released Date: 2018-05-23 
• Deposition Author(s): Li, J., Zhu, R., Chen, K., Zheng, H., Yuan, C., Zhang, H., Wang, C., Zhang, M.

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Funding Organization	Location	Grant Number
Research Grants Council (RGC)	Hong Kong	AoE-M09-12

Revision History 

• Version 1.0: 2018-05-23
  Type: Initial release
• Version 1.1: 2018-07-04
  Type: Data collection, Database references, Derived calculations
• Version 1.2: 2018-08-01
  Type: Data collection, Database references