5YDZ

structure of endo-lysosomal TRPML1 channel inserting into amphipol: state 1

  • Classification: MEMBRANE PROTEIN
  • Organism(s): Mus musculus
  • Expression System: Homo sapiens

  • Deposited: 2017-09-15 Released: 2017-12-27 
  • Deposition Author(s): Yang, M., Gao, N.
  • Funding Organization(s): the National Key R&D Program of China; the National Natural Science Foundation of China 

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.8 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Cryo-EM structures of the mammalian endo-lysosomal TRPML1 channel elucidate the combined regulation mechanism

Zhang, S.Li, N.Zeng, W.Gao, N.Yang, M.

(2017) Protein Cell 8: 834-847

  • DOI: 10.1007/s13238-017-0476-5
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • TRPML1 channel is a non-selective group-2 transient receptor potential (TRP) channel with Ca2+ permeability. Located mainly in late endosome and lysosome of all mammalian cell types, TRPML1 is indispensable in the processes of endocytosis, membrane t ...

    TRPML1 channel is a non-selective group-2 transient receptor potential (TRP) channel with Ca2+ permeability. Located mainly in late endosome and lysosome of all mammalian cell types, TRPML1 is indispensable in the processes of endocytosis, membrane trafficking, and lysosome biogenesis. Mutations of TRPML1 cause a severe lysosomal storage disorder called mucolipidosis type IV (MLIV). In the present study, we determined the cryo-electron microscopy (cryo-EM) structures of Mus musculus TRPML1 (mTRPML1) in lipid nanodiscs and Amphipols. Two distinct states of mTRPML1 in Amphipols are added to the closed state, on which could represent two different confirmations upon activation and regulation. The polycystin-mucolipin domain (PMD) may sense the luminal/extracellular stimuli and undergo a "move upward" motion during endocytosis, thus triggering the overall conformational change in TRPML1. Based on the structural comparisons, we propose TRPML1 is regulated by pH, Ca2+, and phosphoinositides in a combined manner so as to accommodate the dynamic endocytosis process.


    Organizational Affiliation

    Ministry of Education Key Laboratory of Protein Science, Tsinghua-Peking Joint Center for Life Sciences, Beijing Advanced Innovation Center for Structural Biology, School of Life Sciences, Tsinghua University, Beijing, 100084, China.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
mammalian endo-lysosomal TRPML1 channel
A, B, C, D
580Mus musculusMutation(s): 0 
Gene Names: Mcoln1
Find proteins for Q99J21 (Mus musculus)
Go to UniProtKB:  Q99J21
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.8 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2017-09-15 
  • Released Date: 2017-12-27 
  • Deposition Author(s): Yang, M., Gao, N.

Funding OrganizationLocationGrant Number
the National Key R&D Program of ChinaChina2017YFA0504600 and 2016YFA0501100, 2016YFA0500700 and 2017YFA0505800
the National Natural Science Foundation of ChinaChinaGrant Nos. 21532004, 31570733, 31630087, and 31770936

Revision History 

  • Version 1.0: 2017-12-27
    Type: Initial release