Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: authors reported there is no experimental evidence

Macromolecule Content

• Total Structure Weight: 34542.96 
• Atom Count: 2231 
• Residue Count: 299 
• Unique protein chains: 2

5YCP

Human PPARgamma ligand binding domain complexed with Rosiglitazone

• DOI: 10.2210/pdb5YCP/pdb

• Classification: TRANSCRIPTION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli


• Deposited: 2017-09-07 Released: 2018-09-12 
• Deposition Author(s): Jang, J.Y., Han, B.W.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2 Å
• R-Value Free: 0.233 
• R-Value Work: 0.201 

Literature

Structural Basis for the Enhanced Anti-Diabetic Efficacy of Lobeglitazone on PPAR gamma.

Jang, J.Y., Bae, H., Lee, Y.J., Choi, Y.I., Kim, H.J., Park, S.B., Suh, S.W., Kim, S.W., Han, B.W.

(2018) Sci Rep 8: 31-31

• PubMed: 29311579 
• Primary Citation of Related Structures:  
  5YCN

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Peroxisome proliferator-activated receptor gamma	A	283	Homo sapiens	Mutation(s): 0  Gene Names: PPARG (NR1C3)
Find proteins for P37231 (Homo sapiens) Go to Gene View: PPARG Go to UniProtKB:  P37231

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
Nuclear receptor coactivator 1	B	16	Homo sapiens	Mutation(s): 0  Gene Names: NCOA1 (BHLHE74, SRC1) EC: 2.3.1.48
Find proteins for Q15788 (Homo sapiens) Go to Gene View: NCOA1 Go to UniProtKB:  Q15788

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
BRL	A	2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) BRL49653; ROSIGLITAZONE C18 H19 N3 O3 S YASAKCUCGLMORW-HNNXBMFYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2 Å
• R-Value Free: 0.233 
• R-Value Work: 0.201 
• Space Group: P 2₁ 2₁ 2

Unit Cell:

Length (Å)	Angle (°)
a = 130.809	α = 90.00
b = 53.133	β = 90.00
c = 54.570	γ = 90.00

Software Package:

Software Name	Purpose
MOLREP	phasing
HKL-2000	data reduction
HKL-2000	data scaling
REFMAC	refinement

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2017-09-07 
• Released Date: 2018-09-12 
• Deposition Author(s): Jang, J.Y., Han, B.W.

Revision History 

• Version 1.0: 2018-09-12
  Type: Initial release
• Version 1.1: 2019-03-27
  Type: Data collection, Database references