5XS0

Structure of a ssDNA bound to the outer DNA binding site of RAD52


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.221 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural Basis of Homology-directed DNA Repair Mediated by RAD52

Saotome, M.Saito, K.Yasuda, T.Ohtomo, H.Sugiyama, S.Nishimura, Y.Kurumizaka, H.Kagawa, W.

(2018) iScience --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DNA repair protein RAD52 homolog
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V
215Homo sapiensMutation(s): 0 
Gene Names: RAD52
Find proteins for P43351 (Homo sapiens)
Go to Gene View: RAD52
Go to UniProtKB:  P43351
Entity ID: 2
MoleculeChainsLengthOrganism
ssDNA (5'-D(*CP*CP*CP*CP*CP*C)-3')W6synthetic construct
Entity ID: 3
MoleculeChainsLengthOrganism
ssDNA (5'-D(*CP*CP*CP*CP*CP*CP*CP*C)-3')X8synthetic construct
Entity ID: 4
MoleculeChainsLengthOrganism
ssDNA (5'-D(*CP*CP*CP*CP*CP*CP*CP*CP*CP*C)-3')Y10synthetic construct
Entity ID: 5
MoleculeChainsLengthOrganism
ssDNA (5'-D(*CP*CP*CP*CP*CP*CP*CP*CP*C)-3')Z9synthetic construct
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.221 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 100.224α = 90.00
b = 164.408β = 90.19
c = 166.087γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
Aimlessdata scaling
PHENIXrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
JSPS KAKENHIJapanJP24570138
JSPS KAKENHIJapanJP26116521
JSPS KAKENHIJapanJP16H01316
JSPS KAKENHIJapanJP25116002
JSPS KAKENHIJapanJP25250023
JSPS KAKENHIJapanJP17H01408
Japan Private School Promotion FoundationJapan--

Revision History 

  • Version 1.0: 2018-04-25
    Type: Initial release