5XRZ

Structure of a ssDNA bound to the inner DNA binding site of RAD52


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.6 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.216 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural Basis of Homology-directed DNA Repair Mediated by RAD52

Saotome, M.Saito, K.Yasuda, T.Ohtomo, H.Sugiyama, S.Nishimura, Y.Kurumizaka, H.Kagawa, W.

(2018) iScience --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DNA repair protein RAD52 homolog
A, B, C, D, E, F, G, H, I, J, K
215Homo sapiensMutation(s): 2 
Gene Names: RAD52
Find proteins for P43351 (Homo sapiens)
Go to Gene View: RAD52
Go to UniProtKB:  P43351
Entity ID: 2
MoleculeChainsLengthOrganism
ssDNA (40-MER)L40synthetic construct
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H, I, K
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.6 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.216 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 67.621α = 91.89
b = 101.420β = 108.68
c = 101.710γ = 108.17
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
PHASERphasing
iMOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
JSPS KAKENHIJapanJP24570138
JSPS KAKENHIJapanJP26116521
JSPS KAKENHIJapanJP16H01316
Japan Private School Promotion FoundationJapan--

Revision History 

  • Version 1.0: 2018-04-25
    Type: Initial release