5XJM

Complex structure of angiotensin II type 2 receptor with Fab


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.226 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of the human angiotensin II type 2 receptor bound to an angiotensin II analog

Asada, H.Horita, S.Hirata, K.Shiroishi, M.Shiimura, Y.Iwanari, H.Hamakubo, T.Shimamura, T.Nomura, N.Kusano-Arai, O.Uemura, T.Suno, C.Kobayashi, T.Iwata, S.

(2018) Nat. Struct. Mol. Biol. 25: 570-576


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Type-2 angiotensin II receptor,Soluble cytochrome b562,Type-2 angiotensin II receptor
A
422Escherichia coliHomo sapiens
This entity is chimeric
Mutation(s): 3 
Gene Names: cybC, AGTR2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
G Protein-Coupled Receptors (GPCRs)
Protein: 
Angiotensin type II receptor in complex with compound 1 (monoclinic xtals)
Find proteins for P0ABE7 (Escherichia coli)
Go to UniProtKB:  P0ABE7
Find proteins for P50052 (Homo sapiens)
Go to Gene View: AGTR2
Go to UniProtKB:  P50052
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
FabH
H
220N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
FabL
L
212N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Sar1, Ile8-angiotensin II
B
8N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
SAR
Query on SAR
B
PEPTIDE LINKINGC3 H7 N O2GLY
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.226 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 465.390α = 90.00
b = 48.650β = 90.00
c = 55.700γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
MOLREPphasing
XSCALEdata scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of ScienceJapan15J04343
Japan Society for the Promotion of ScienceJapan15J04343
Japan Society for the Promotion of ScienceJapan22590270
Japan Agency for Medical Research and DevelopmentJapanA19170600003

Revision History 

  • Version 1.0: 2018-07-11
    Type: Initial release
  • Version 1.1: 2018-07-18
    Type: Data collection, Database references
  • Version 1.2: 2018-07-25
    Type: Data collection, Database references