5X70

Crystal structure of Rice Dwarf Virus P5 in complex with a ssRNA oligomer


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.220 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of capping enzyme from Rice dwarf virus

Nakamichi, Y.Higashiura, A.Narita, H.Hagiwara, K.Uehara-Ichiki, T.Omura, T.Nakagawa, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
mRNA capping enzyme P5
A, C, D, B
804Rice dwarf virus (isolate Akita)Mutation(s): 0 
Find proteins for P14583 (Rice dwarf virus (isolate Akita))
Go to UniProtKB:  P14583
Entity ID: 2
MoleculeChainsLengthOrganism
RNA (5'-R(P*GP*GP*CP*AP*AP*A)-3')E,G6Rice dwarf virus
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.220 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 80.754α = 104.74
b = 80.657β = 104.00
c = 145.734γ = 95.29
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
JSPSJapanJP25251009

Revision History 

  • Version 1.0: 2018-02-28
    Type: Initial release