Download MendeleyCrystal structure of pseudorabies virus glycoprotein D
Li, A., Lu, G., Qi, J., Wu, L., Tian, K., Luo, T., Shi, Y., Yan, J., Gao, G.F.To be published.
5X5V
Crystal structure of pseudorabies virus glycoprotein D
- PDB DOI: 10.2210/pdb5X5V/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Suid alphaherpesvirus 1
- Expression System: Escherichia coli K-12
- Mutation(s): No
- Deposited: 2017-02-17 Released: 2017-04-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.192
- R-Value Work: 0.169
- R-Value Observed: 0.170
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| GD | A | 402 | Suid alphaherpesvirus 1 | Mutation(s): 0 Gene Names: US6 |  |
UniProt | |||||
Find proteins for G3G933 (Suid alphaherpesvirus 1) Explore G3G933 Go to UniProtKB: G3G933 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | G3G933 | ||||
Protein Feature ViewExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.192
- R-Value Work: 0.169
- R-Value Observed: 0.170
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 79.398 | α = 90 |
| b = 60.975 | β = 111.22 |
| c = 60.681 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| PHASER | phasing |
