Download MendeleyGreen fluorescent protein linked peptide inhibitor PMI in complex with mdm2
Chee, S.M.Q., Wongsantichon, J., Sana, B., Robinson, R.C., Ghadessy, F.J.To be published.
5WTS | pdb_00005wts
Green fluorescent protein linked MTide-02 inhibitor in complex with mdm2
- PDB DOI: https://doi.org/10.2210/pdb5WTS/pdb
- Classification: FLUORESCENT PROTEIN/INHIBITOR
- Organism(s): Aequorea victoria, Camelus dromedarius, Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2016-12-14 Released: 2017-12-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Free: 0.244 (Depositor), 0.240 (DCC)
- R-Value Work: 0.204 (Depositor), 0.200 (DCC)
- R-Value Observed: 0.206 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Green fluorescent protein linked MTide-02 | 358 | Aequorea victoria, Camelus dromedarius This entity is chimeric | Mutation(s): 0 Gene Names: GFP |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| E3 ubiquitin-protein ligase Mdm2 | 122 | Homo sapiens | Mutation(s): 0 Gene Names: MDM2 EC: 2.3.2.27 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q00987 (Homo sapiens) Explore Q00987 Go to UniProtKB: Q00987 | |||||
PHAROS: Q00987 GTEx: ENSG00000135679 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q00987 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PG4 Query on PG4 | E [auth B] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N |  | ||
| PO4 Query on PO4 | D [auth A], F [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| GOL Query on GOL | C [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CRO Query on CRO | A | L-PEPTIDE LINKING | C15 H17 N3 O5 |  | THR, TYR, GLY |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Free: 0.244 (Depositor), 0.240 (DCC)
- R-Value Work: 0.204 (Depositor), 0.200 (DCC)
- R-Value Observed: 0.206 (Depositor)
Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 51.766 | α = 90 |
| b = 98.422 | β = 90 |
| c = 218.988 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2017-12-20 Deposition Author(s): Wongsantichon, J., Robinson, R.C., Ghadessy, F.J.
Revision History (Full details and data files)
- Version 1.0: 2017-12-20
Type: Initial release - Version 1.1: 2018-09-12
Changes: Data collection, Source and taxonomy - Version 1.2: 2019-11-06
Changes: Data collection, Structure summary - Version 1.3: 2020-11-18
Changes: Source and taxonomy - Version 1.4: 2020-11-25
Changes: Database references, Derived calculations, Source and taxonomy, Structure summary - Version 1.5: 2024-10-23
Changes: Data collection, Database references, Structure summary
