Macromolecule Content

Total Structure Weight: 75.54 kDa
Atom Count: 5179
Residue Count: 649
Unique protein chains: 1

5WTD

Structure of human serum transferrin bound ruthenium at N-lobe

DOI: 10.2210/pdb5WTD/pdb

Classification: METAL TRANSPORT
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2016-12-11 Released: 2017-12-20
Deposition Author(s): Sun, H., Wang, M., Lai, T.P., Zhang, H., Hao, Q.
Funding Organization(s): Research Grant Council

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.214
R-Value Work: 0.180
R-Value Observed: 0.182

wwPDB Validation 3D Report Full Report

Literature

Ruthenium bound to the N-lobe of human serum transferrin

Sun, H., Wang, M., Lai, T.P., Zhang, H., Hao, Q.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serotransferrin	A	679	Homo sapiens	Mutation(s): 0 Gene Names: TF, PRO1400
Find proteins for P02787 (Homo sapiens) Explore P02787 Go to UniProtKB: P02787
NIH Common Fund Data Resources
PHAROS: P02787 GTEx: ENSG00000091513
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MLI Query on MLI Download Ideal Coordinates CCD File SDF format, chain C [A] MOL2 format, chain C [A]	A	MALONATE ION C₃ H₂ O₄ OFOBLEOULBTSOW-UHFFFAOYSA-L		Ligand Interaction
RU Query on RU Download Ideal Coordinates CCD File SDF format, chain D [A] MOL2 format, chain D [A]	A	RUTHENIUM ION Ru BPEVHDGLPIIAGH-UHFFFAOYSA-N		Ligand Interaction
FE Query on FE Download Ideal Coordinates CCD File SDF format, chain B [A] MOL2 format, chain B [A]	A	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.214
R-Value Work: 0.180
R-Value Observed: 0.182
Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 137.113	α = 90
b = 157.351	β = 90
c = 107.086	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
SCALEPACK	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
DENZO	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Deposited Date: 2016-12-11
Released Date: 2017-12-20

Deposition Author(s):

Funding Organization	Location	Grant Number
Research Grant Council	Hong Kong	705310P

Revision History

Version 1.0: 2017-12-20
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.