Macromolecule Content

Total Structure Weight: 75543.44
Atom Count: 5024
Residue Count: 679
Unique protein chains: 1

5WTD

Structure of human serum transferrin bound ruthenium at N-lobe

DOI: 10.2210/pdb5WTD/pdb

Classification: METAL TRANSPORT
Organism(s): Homo sapiens

Deposited: 2016-12-11 Released: 2017-12-20
Deposition Author(s): Sun, H., Wang, M., Lai, T.P., Zhang, H., Hao, Q.
Funding Organization(s): Research Grant Council

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.501 Å
R-Value Free: 0.214
R-Value Work: 0.180

wwPDB Validation3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Ruthenium bound to the N-lobe of human serum transferrin

Sun, H., Wang, M., Lai, T.P., Zhang, H., Hao, Q.

To be published.

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Serotransferrin	A	679	Homo sapiens	Mutation(s): 0 Gene Names: TF
Find proteins for P02787 (Homo sapiens) Go to Gene View: TF Go to UniProtKB: P02787
Protein Feature View Full Protein Feature View for P02787

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions	3D Interactions
RU Query on RU Download SDF File Download CCD File	A	RUTHENIUM ION Ru BPEVHDGLPIIAGH-UHFFFAOYSA-N		Ligand Interaction
MLI Query on MLI Download SDF File Download CCD File	A	MALONATE ION C₃ H₂ O₄ OFOBLEOULBTSOW-UHFFFAOYSA-L		Ligand Interaction
FE Query on FE Download SDF File Download CCD File	A	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.501 Å
R-Value Free: 0.214
R-Value Work: 0.180
Space Group: C 2 2 2₁

Unit Cell:

Length (Å)	Angle (°)
a = 137.113	α = 90.00
b = 157.351	β = 90.00
c = 107.086	γ = 90.00

Software Package:

Software Name	Purpose
PDB_EXTRACT	data extraction
DENZO	data reduction
HKL-2000	data collection
PHENIX	refinement
PHASER	phasing
SCALEPACK	data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots

Entry History & Funding Information

Deposition Data

Deposited Date: 2016-12-11
Released Date: 2017-12-20
Deposition Author(s): Sun, H., Wang, M., Lai, T.P., Zhang, H., Hao, Q.

Funding Organization	Location	Grant Number
Research Grant Council	Hong Kong	705310P

Revision History

Version 1.0: 2017-12-20
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the National Institutes of Health, and the US Department of Energy (DE-SC0019749).