Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

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Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - AB 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 45081.13 
• Atom Count: 3181 
• Residue Count: 384 
• Unique protein chains: 3

5WSH

Structure of HLA-A2 P130

• DOI: 10.2210/pdb5WSH/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Homo sapiens
• Expression System: Escherichia coli K-12
• Mutation(s): 1 


• Deposited: 2016-12-07 Released: 2017-12-20 
• Deposition Author(s): Zhang, Y., Wu, Y., Qi, J., Liu, J., Gao, G.F., Meng, S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2 Å
• R-Value Free: 0.196 
• R-Value Work: 0.162 

Literature

CD8+T-Cell Response-Associated Evolution of Hepatitis B Virus Core Protein and Disease Progress.

Zhang, Y., Wu, Y., Deng, M., Xu, D., Li, X., Xu, Z., Hu, J., Zhang, H., Liu, K., Zhao, Y., Gao, F., Bi, S., Gao, G.F., Zhao, J., Liu, W.J., Meng, S.

(2018) J. Virol. 92: --

• PubMed: 29950410 
• Primary Citation of Related Structures:  
  5E00

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
HLA class I histocompatibility antigen, A-2 alpha chain	A	275	Homo sapiens	Mutation(s): 1  Gene Names: HLA-A (HLAA)
Find proteins for P01892 (Homo sapiens) Go to Gene View: HLA-A Go to UniProtKB:  P01892

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
Beta-2-microglobulin	B	100	Homo sapiens	Mutation(s): 0  Gene Names: B2M
Find proteins for P61769 (Homo sapiens) Go to Gene View: B2M Go to UniProtKB:  P61769

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details
GLY-VAL-TRP-ILE-ARG-THR-PRO-THR-ALA	C	9	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
PEG	A, B	DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2 Å
• R-Value Free: 0.196 
• R-Value Work: 0.162 
• Space Group: C 1 2 1

Unit Cell:

Length (Å)	Angle (°)
a = 112.159	α = 90.00
b = 78.675	β = 96.93
c = 60.295	γ = 90.00

Software Package:

Software Name	Purpose
PHENIX	refinement
CNS	phasing
CNS	data scaling
CNS	data reduction

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2016-12-07 
• Released Date: 2017-12-20 
• Deposition Author(s): Zhang, Y., Wu, Y., Qi, J., Liu, J., Gao, G.F., Meng, S.

Revision History 

• Version 1.0: 2017-12-20
  Type: Initial release
• Version 1.1: 2019-01-23
  Type: Data collection, Database references