5WMG

N-terminal bromodomain of BRD4 in complex with OTX-015


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.19 Å
  • R-Value Free: 0.146 
  • R-Value Work: 0.130 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

BRD4 Profiling Identifies Critical Chronic Lymphocytic Leukemia Oncogenic Circuits and Reveals Sensitivity to PLX51107, a Novel Structurally Distinct BET Inhibitor.

Ozer, H.G.El-Gamal, D.Powell, B.Hing, Z.A.Blachly, J.S.Harrington, B.Mitchell, S.Grieselhuber, N.R.Williams, K.Lai, T.H.Alinari, L.Baiocchi, R.A.Brinton, L.Baskin, E.Cannon, M.Beaver, L.Goettl, V.M.Lucas, D.M.Woyach, J.A.Sampath, D.Lehman, A.M.Yu, L.Zhang, J.Ma, Y.Zhang, Y.Spevak, W.Shi, S.Severson, P.Shellooe, R.Carias, H.Tsang, G.Dong, K.Ewing, T.Marimuthu, A.Tantoy, C.Walters, J.Sanftner, L.Rezaei, H.Nespi, M.Matusow, B.Habets, G.Ibrahim, P.Zhang, C.Mathe, E.A.Bollag, G.Byrd, J.C.Lapalombella, R.

(2018) Cancer Discov 8: 458-477


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Bromodomain-containing protein 4
A
127Homo sapiensMutation(s): 1 
Gene Names: BRD4 (HUNK1)
Find proteins for O60885 (Homo sapiens)
Go to Gene View: BRD4
Go to UniProtKB:  O60885
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
6JF
Query on 6JF

Download SDF File 
Download CCD File 
A
4-{6-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(1S)-1-(pyridin-2-yl)ethyl]-1H-pyrrolo[3,2-b]pyridin-3-yl}benzoic acid
C26 H22 N4 O3
AMSUHYUVOVCWTP-INIZCTEOSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.19 Å
  • R-Value Free: 0.146 
  • R-Value Work: 0.130 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 38.825α = 90.00
b = 42.217β = 90.00
c = 92.440γ = 90.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
PHENIXrefinement
MOLREPphasing
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2017-07-28 
  • Released Date: 2018-08-01 
  • Deposition Author(s): Zhang, Y.

Revision History 

  • Version 1.0: 2018-08-01
    Type: Initial release
  • Version 1.1: 2019-02-13
    Type: Data collection, Database references