5WMA

N-terminal bromodomain of BRD4 in complex with PLX5981


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.401 Å
  • R-Value Free: 0.176 
  • R-Value Work: 0.146 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

BRD4 Profiling Identifies Critical Chronic Lymphocytic Leukemia Oncogenic Circuits and Reveals Sensitivity to PLX51107, a Novel Structurally Distinct BET Inhibitor.

Ozer, H.G.El-Gamal, D.Powell, B.Hing, Z.A.Blachly, J.S.Harrington, B.Mitchell, S.Grieselhuber, N.R.Williams, K.Lai, T.H.Alinari, L.Baiocchi, R.A.Brinton, L.Baskin, E.Cannon, M.Beaver, L.Goettl, V.M.Lucas, D.M.Woyach, J.A.Sampath, D.Lehman, A.M.Yu, L.Zhang, J.Ma, Y.Zhang, Y.Spevak, W.Shi, S.Severson, P.Shellooe, R.Carias, H.Tsang, G.Dong, K.Ewing, T.Marimuthu, A.Tantoy, C.Walters, J.Sanftner, L.Rezaei, H.Nespi, M.Matusow, B.Habets, G.Ibrahim, P.Zhang, C.Mathe, E.A.Bollag, G.Byrd, J.C.Lapalombella, R.

(2018) Cancer Discov 8: 458-477


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Bromodomain-containing protein 4
A
127Homo sapiensMutation(s): 0 
Gene Names: BRD4 (HUNK1)
Find proteins for O60885 (Homo sapiens)
Go to Gene View: BRD4
Go to UniProtKB:  O60885
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
6JC
Query on 6JC

Download SDF File 
Download CCD File 
A
5-(3,5-dimethyl-1,2-oxazol-4-yl)-1H-pyrrolo[2,3-b]pyridine
C12 H11 N3 O
UKELRNSNPZHDOM-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.401 Å
  • R-Value Free: 0.176 
  • R-Value Work: 0.146 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 37.226α = 90.00
b = 44.470β = 90.00
c = 78.311γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
PHENIXrefinement
SCALEPACKdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2017-07-28 
  • Released Date: 2018-08-01 
  • Deposition Author(s): Zhang, Y.

Revision History 

  • Version 1.0: 2018-08-01
    Type: Initial release
  • Version 1.1: 2019-02-13
    Type: Data collection, Database references