5W1M

MACV GP1 CR1-07 Fab complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.91 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.248 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Vaccine-elicited receptor-binding site antibodies neutralize two New World hemorrhagic fever arenaviruses.

Clark, L.E.Mahmutovic, S.Raymond, D.D.Dilanyan, T.Koma, T.Manning, J.T.Shankar, S.Levis, S.C.Briggiler, A.M.Enria, D.A.Wucherpfennig, K.W.Paessler, S.Abraham, J.

(2018) Nat Commun 9: 1884-1884


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CR1-07 Fab light chain
A, C, E, G
221Homo sapiensMutation(s): 0 
Find proteins for Q0KKI6 (Homo sapiens)
Go to UniProtKB:  Q0KKI6
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
CR1-07 Fab heavy chain
B, D, F, H
226Homo sapiensMutation(s): 0 
Gene Names: DKFZp686P15220
Find proteins for Q6N089 (Homo sapiens)
Go to UniProtKB:  Q6N089
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Pre-glycoprotein polyprotein GP complex
Q, R, S, T
152Machupo virusMutation(s): 0 
Gene Names: GPC
Find proteins for Q8AZ57 (Machupo virus)
Go to UniProtKB:  Q8AZ57
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BMA
Query on BMA

Download SDF File 
Download CCD File 
Q, S
BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
Q, R, S, T
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.91 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.248 
  • Space Group: P 42 21 2
Unit Cell:
Length (Å)Angle (°)
a = 206.970α = 90.00
b = 206.970β = 90.00
c = 238.230γ = 90.00
Software Package:
Software NamePurpose
BUSTERrefinement
PHASERphasing
PDB_EXTRACTdata extraction
XDSdata reduction
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesAI007061
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesAI109740
Other privateUnited StatesBurroughs Wellcome
Other privateUnited StatesWilliam Randolph Hearst Foundation and Brigham and Womens Hospital
Other privateUnited StatesHarvard Medical School DICP

Revision History 

  • Version 1.0: 2018-05-30
    Type: Initial release