5W1K

JUNV GP1 CR1-10 Fab CR1-28 Fab complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.99 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.237 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Vaccine-elicited receptor-binding site antibodies neutralize two New World hemorrhagic fever arenaviruses.

Clark, L.E.Mahmutovic, S.Raymond, D.D.Dilanyan, T.Koma, T.Manning, J.T.Shankar, S.Levis, S.C.Briggiler, A.M.Enria, D.A.Wucherpfennig, K.W.Paessler, S.Abraham, J.

(2018) Nat Commun 9: 1884-1884


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CR1-28 Fab light chain
A, F, K, S
206Homo sapiensMutation(s): 0 
Find proteins for P0DOX7 (Homo sapiens)
Go to UniProtKB:  P0DOX7
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
CR1-28 Fab heavy chain
B, G, L, T
226Homo sapiensMutation(s): 0 
Find proteins for S6C4R2 (Homo sapiens)
Go to UniProtKB:  S6C4R2
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
CR1-10 Fab light chain
C, H, M, N
213Homo sapiensMutation(s): 0 
Gene Names: IGK@
Find proteins for Q6PIL8 (Homo sapiens)
Go to UniProtKB:  Q6PIL8
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
CR1-10 Fab heavy chain
D, I, O, Q
225Homo sapiensMutation(s): 0 
Find proteins for S6B2B6 (Homo sapiens)
Go to UniProtKB:  S6B2B6
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
Pre-glycoprotein polyprotein GP complex
E, J, P, R
142Junin mammarenavirusMutation(s): 0 
Gene Names: GPC (GP-C)
Find proteins for P26313 (Junin mammarenavirus)
Go to UniProtKB:  P26313
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BMA
Query on BMA

Download SDF File 
Download CCD File 
E, P, R
BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
E, J, P, R
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.99 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.237 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 154.840α = 90.00
b = 132.230β = 92.47
c = 167.420γ = 90.00
Software Package:
Software NamePurpose
XSCALEdata scaling
PHASERphasing
PDB_EXTRACTdata extraction
BUSTERrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/Office of the DirectorUnited StatesDP5OD023084
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesAI007061
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesAI109740
Other privateUnited StatesBurroughs Wellcome Fund
Other privateUnited StatesWilliam Randolph Hearst Foundation and Brigham and Womens Hospital
Other privateUnited StatesHarvard Medical School DICP

Revision History 

  • Version 1.0: 2018-05-30
    Type: Initial release