Biological Assembly 1  

 3D View: Structure | 1D-3D View | Validation Report

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: isothermal titration calorimetry

Macromolecule Content

• Total Structure Weight: 20.56 kDa 
• Atom Count: 1443 
• Modelled Residue Count: 187 
• Deposited Residue Count: 187 
• Unique protein chains: 2

5VZM

Solution NMR structure of human Rev1 (932-1039) in complex with ubiquitin

• PDB DOI: 10.2210/pdb5VZM/pdb
• BMRB: 30300

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2017-05-29 Released: 2018-05-23 
• Deposition Author(s): Cui, G., Botuyan, M.V., Mer, G.
• Funding Organization(s): National Institutes of Health/National Cancer Institute (NIH/NCI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Structural Basis for the Interaction of Mutasome Assembly Factor REV1 with Ubiquitin.

Cui, G., Botuyan, M.V., Mer, G.

(2018) J Mol Biol 430: 2042-2050

• PubMed: 29778604 
• DOI: 10.1016/j.jmb.2018.05.017
• Primary Citation of Related Structures:  
  5VZM


• PubMed Abstract: 
  

REV1 is an evolutionarily conserved translesion synthesis (TLS) DNA polymerase and an assembly factor key for the recruitment of other TLS polymerases to DNA damage sites. REV1-mediated recognition of ubiquitin in the proliferative cell nuclear antigen is thought to be the trigger for TLS activation. Here we report the solution NMR structure of a 108-residue fragment of human REV1 encompassing the two putative ubiquitin-binding motifs UBM1 and UBM2 in complex with ubiquitin. While in mammals UBM1 and UBM2 are both required for optimal association of REV1 with replication factories after DNA damage, we show that only REV1 UBM2 binds ubiquitin. Structure-guided mutagenesis in Saccharomyces cerevisiae further highlights the importance of UBM2 for REV1-mediated mutagenesis and DNA damage tolerance.

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Organizational Affiliation: 

Department of Biochemistry and Molecular Biology, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA. Electronic address: [e-mail].

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin	A	76	Homo sapiens	Mutation(s): 0  Gene Names: UBB
UniProt & NIH Common Fund Data Resources
Find proteins for P0CG47 (Homo sapiens) Explore P0CG47  Go to UniProtKB:  P0CG47
PHAROS:  P0CG47

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA repair protein REV1	B	111	Homo sapiens	Mutation(s): 0  Gene Names: REV1, REV1L EC: 2.7.7
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UBZ9 (Homo sapiens) Explore Q9UBZ9  Go to UniProtKB:  Q9UBZ9
PHAROS:  Q9UBZ9 GTEx:  ENSG00000135945

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 
• OLDERADO: 5VZM Olderado

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2017-05-29 
• Released Date: 2018-05-23 
Deposition Author(s): Cui, G., Botuyan, M.V., Mer, G.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)	United States	CA132878

Revision History  

• Version 1.0: 2018-05-23
  Type: Initial release
  
• Version 1.1: 2018-07-04
  Changes: Data collection, Database references
• Version 1.2: 2019-12-04
  Changes: Author supporting evidence, Data collection