5VZM

Solution NMR structure of human Rev1 (932-1039) in complex with ubiquitin

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1 mM [U-100% 13C; U-100% 15N] Ubiquitin, 20 mM Sodium phosphate buffer	90% H2O/10% D2O	20 mM sodium phosphate mM	7.0	1 atm	303	Bruker AVANCE III 700
2	2D 1H-13C HSQC	1 mM [U-100% 13C; U-100% 15N] Ubiquitin, 20 mM Sodium phosphate buffer	90% H2O/10% D2O	20 mM sodium phosphate mM	7.0	1 atm	303	Bruker AVANCE III 700
3	2D 1H-13C HSQC aromatic	1 mM [U-100% 13C; U-100% 15N] Ubiquitin, 20 mM Sodium phosphate buffer	90% H2O/10% D2O	20 mM sodium phosphate mM	7.0	1 atm	303	Bruker AVANCE III 700
4	3D HNCACB	1 mM [U-100% 13C; U-100% 15N] Ubiquitin, 20 mM Sodium phosphate buffer	90% H2O/10% D2O	20 mM sodium phosphate mM	7.0	1 atm	303	Bruker AVANCE III 700
5	3D CBCA(CO)NH	1 mM [U-100% 13C; U-100% 15N] Ubiquitin, 20 mM Sodium phosphate buffer	90% H2O/10% D2O	20 mM sodium phosphate mM	7.0	1 atm	303	Bruker AVANCE III 700
6	3D HNCO	1 mM [U-100% 13C; U-100% 15N] Ubiquitin, 20 mM Sodium phosphate buffer	90% H2O/10% D2O	20 mM sodium phosphate mM	7.0	1 atm	303	Bruker AVANCE III 700
7	3D HN(CA)CO	1 mM [U-100% 13C; U-100% 15N] Ubiquitin, 20 mM Sodium phosphate buffer	90% H2O/10% D2O	20 mM sodium phosphate mM	7.0	1 atm	303	Bruker AVANCE III 700
8	3D HBHA(CO)NH	1 mM [U-100% 13C; U-100% 15N] Ubiquitin, 20 mM Sodium phosphate buffer	90% H2O/10% D2O	20 mM sodium phosphate mM	7.0	1 atm	303	Bruker AVANCE III 700
9	3D H(CCO)NH	1 mM [U-100% 13C; U-100% 15N] Ubiquitin, 20 mM Sodium phosphate buffer	90% H2O/10% D2O	20 mM sodium phosphate mM	7.0	1 atm	303	Bruker AVANCE III 700
11	3D (H)CC(CO)NH	1 mM [U-100% 13C; U-100% 15N] Ubiquitin, 20 mM Sodium phosphate buffer	90% H2O/10% D2O	20 mM sodium phosphate mM	7.0	1 atm	303	Bruker AVANCE III 700
28	3D HCCH-TOCSY	1 mM [U-100% 13C; U-100% 15N] Ubiquitin, 20 mM Sodium phosphate buffer	90% H2O/10% D2O	20 mM sodium phosphate mM	7.0	1 atm	303	Bruker AVANCE III 700
12	3D 1H-15N TOCSY	1 mM [U-100% 13C; U-100% 15N] Ubiquitin, 20 mM Sodium phosphate buffer	90% H2O/10% D2O	20 mM sodium phosphate mM	7.0	1 atm	303	Bruker AVANCE III 700
13	3D 1H-15N NOESY	1 mM [U-100% 13C; U-100% 15N] Ubiquitin, 20 mM Sodium phosphate buffer	90% H2O/10% D2O	20 mM sodium phosphate mM	7.0	1 atm	303	Bruker AVANCE III 700
14	3D 1H-13C NOESY	1 mM [U-100% 13C; U-100% 15N] Ubiquitin, 20 mM Sodium phosphate buffer	90% H2O/10% D2O	20 mM sodium phosphate mM	7.0	1 atm	303	Bruker AVANCE III 700
15	3D 1H-13C NOESY aromatic	1 mM [U-100% 13C; U-100% 15N] Ubiquitin, 20 mM Sodium phosphate buffer	90% H2O/10% D2O	20 mM sodium phosphate mM	7.0	1 atm	303	Bruker AVANCE III 700
16	2D 1H-15N HSQC	1 mM [U-100% 13C; U-100% 15N] Rev1, 3 mM Ubiquitin, 50 mM Sodium phosphate buffer	90% H2O/10% D2O	50 mM sodium phosphate mM	6.8	1 atm	303	Bruker AVANCE III 700
17	2D 1H-13C HSQC	1 mM [U-100% 13C; U-100% 15N] Rev1, 3 mM Ubiquitin, 50 mM Sodium phosphate buffer	90% H2O/10% D2O	50 mM sodium phosphate mM	6.8	1 atm	303	Bruker AVANCE III 700
18	2D 1H-13C HSQC aromatic	1 mM [U-100% 13C; U-100% 15N] Rev1, 3 mM Ubiquitin, 50 mM Sodium phosphate buffer	90% H2O/10% D2O	50 mM sodium phosphate mM	6.8	1 atm	303	Bruker AVANCE III 700
19	3D HNCACB	1 mM [U-100% 13C; U-100% 15N] Rev1, 3 mM Ubiquitin, 50 mM Sodium phosphate buffer	90% H2O/10% D2O	50 mM sodium phosphate mM	6.8	1 atm	303	Bruker AVANCE III 700
20	3D CBCA(CO)NH	1 mM [U-100% 13C; U-100% 15N] Rev1, 3 mM Ubiquitin, 50 mM Sodium phosphate buffer	90% H2O/10% D2O	50 mM sodium phosphate mM	6.8	1 atm	303	Bruker AVANCE III 700
21	3D HNCO	1 mM [U-100% 13C; U-100% 15N] Rev1, 3 mM Ubiquitin, 50 mM Sodium phosphate buffer	90% H2O/10% D2O	50 mM sodium phosphate mM	6.8	1 atm	303	Bruker AVANCE III 700
22	3D HN(CA)CO	1 mM [U-100% 13C; U-100% 15N] Rev1, 3 mM Ubiquitin, 50 mM Sodium phosphate buffer	90% H2O/10% D2O	50 mM sodium phosphate mM	6.8	1 atm	303	Bruker AVANCE III 700
23	3D HBHA(CO)NH	1 mM [U-100% 13C; U-100% 15N] Rev1, 3 mM Ubiquitin, 50 mM Sodium phosphate buffer	90% H2O/10% D2O	50 mM sodium phosphate mM	6.8	1 atm	303	Bruker AVANCE III 700
24	3D H(CCO)NH	1 mM [U-100% 13C; U-100% 15N] Rev1, 3 mM Ubiquitin, 50 mM Sodium phosphate buffer	90% H2O/10% D2O	50 mM sodium phosphate mM	6.8	1 atm	303	Bruker AVANCE III 700
26	3D (H)CC(CO)NH	1 mM [U-100% 13C; U-100% 15N] Rev1, 3 mM Ubiquitin, 50 mM Sodium phosphate buffer	90% H2O/10% D2O	50 mM sodium phosphate mM	6.8	1 atm	303	Bruker AVANCE III 700
27	3D HCCH-TOCSY	1 mM [U-100% 13C; U-100% 15N] Rev1, 3 mM Ubiquitin, 50 mM Sodium phosphate buffer	90% H2O/10% D2O	50 mM sodium phosphate mM	6.8	1 atm	303	Bruker AVANCE III 700
29	3D 1H-15N TOCSY	1 mM [U-100% 13C; U-100% 15N] Rev1, 3 mM Ubiquitin, 50 mM Sodium phosphate buffer	90% H2O/10% D2O	50 mM sodium phosphate mM	6.8	1 atm	303	Bruker AVANCE III 700
30	3D 1H-15N NOESY	1 mM [U-100% 13C; U-100% 15N] Rev1, 3 mM Ubiquitin, 50 mM Sodium phosphate buffer	90% H2O/10% D2O	50 mM sodium phosphate mM	6.8	1 atm	303	Bruker AVANCE III 700
31	3D 1H-13C NOESY	1 mM [U-100% 13C; U-100% 15N] Rev1, 3 mM Ubiquitin, 50 mM Sodium phosphate buffer	90% H2O/10% D2O	50 mM sodium phosphate mM	6.8	1 atm	303	Bruker AVANCE III 700
32	3D 1H-13C NOESY aromatic	1 mM [U-100% 13C; U-100% 15N] Rev1, 3 mM Ubiquitin, 50 mM Sodium phosphate buffer	90% H2O/10% D2O	50 mM sodium phosphate mM	6.8	1 atm	303	Bruker AVANCE III 700
33	13C,15N-filetered/edited NOESY	1 mM [U-100% 13C; U-100% 15N] Rev1, 3 mM Ubiquitin, 50 mM Sodium phosphate buffer	90% H2O/10% D2O	50 mM sodium phosphate mM	6.8	1 atm	303	Bruker AVANCE III 700
34	2D 1H-15N HSQC	3 mM Rev1, 1 mM [U-100% 13C; U-100% 15N] Ubiquitin, 50 mM Sodium phosphate buffer	90% H2O/10% D2O	50 mM sodium phosphate mM	6.8	1 atm	303	Bruker AVANCE III 700
35	2D 1H-13C HSQC	3 mM Rev1, 1 mM [U-100% 13C; U-100% 15N] Ubiquitin, 50 mM Sodium phosphate buffer	90% H2O/10% D2O	50 mM sodium phosphate mM	6.8	1 atm	303	Bruker AVANCE III 700
36	3D 1H-15N NOESY	3 mM Rev1, 1 mM [U-100% 13C; U-100% 15N] Ubiquitin, 50 mM Sodium phosphate buffer	90% H2O/10% D2O	50 mM sodium phosphate mM	6.8	1 atm	303	Bruker AVANCE III 700
37	3D 1H-13C NOESY	3 mM Rev1, 1 mM [U-100% 13C; U-100% 15N] Ubiquitin, 50 mM Sodium phosphate buffer	90% H2O/10% D2O	50 mM sodium phosphate mM	6.8	1 atm	303	Bruker AVANCE III 700
38	13C,15N-filetered/edited NOESY	3 mM Rev1, 1 mM [U-100% 13C; U-100% 15N] Ubiquitin, 50 mM Sodium phosphate buffer	90% H2O/10% D2O	50 mM sodium phosphate mM	6.8	1 atm	303	Bruker AVANCE III 700

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	700

NMR Refinement
Method	Details	Software
simulated annealing		Amber

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	200
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin		Bruker Biospin
2	data analysis	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	data analysis	NMRDraw		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4	data analysis	NMRView		Johnson, One Moon Scientific
5	chemical shift assignment	SANE		Duggan, Legge, Dyson & Wright
6	data analysis	TALOS		Cornilescu, Delaglio and Bax
7	structure calculation	CYANA		Guntert, Mumenthaler and Wuthrich
8	refinement	Amber		Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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5VZM

Solution NMR structure of human Rev1 (932-1039) in complex with ubiquitin