5VXR

The antigen-binding fragment of MAb24 in complex with a peptide from Hepatitis C Virus E2 epitope I (412-423)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.171 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of a monoclonal antibody Fab

Gu, J.Hardy, J.M.Boo, I.Vietheer, P.McCaffrey, K.Pombourios, P.Chopra, A.Gaudieri, S.Coulibaly, F.J.Drummer, H.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
MAb24 Variable Heavy Chain,MAb24 Variable Heavy Chain
H
217N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
MAb24 Variable Light Chain,MAb24 Variable Light Chain
L
217N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Virus Envelope Protein 2
P
12Hepatitis C virusMutation(s): 0 
Find proteins for Q5EG65 (Hepatitis C virus)
Go to UniProtKB:  Q5EG65
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
H, L
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.171 
  • Space Group: I 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 70.370α = 90.00
b = 53.338β = 93.53
c = 133.903γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
PDB_EXTRACTdata extraction
BUSTERrefinement
XDSdata reduction
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Australian Research CouncilAustraliaFT1210893

Revision History 

  • Version 1.0: 2018-02-21
    Type: Initial release