5VXJ

2.50 A resolution structure of IpaD from Shigella flexneri in complex with single-domain antibody JMK-E3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.196 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

2.50 A resolution structure of IpaD from Shigella flexneri in complex with single-domain antibody JMK-E3

Barta, M.L.Lovell, S.Battaile, K.P.Picking, W.D.Picking, W.L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Invasin IpaD
A, C, E, G, I
289Shigella flexneriMutation(s): 1 
Gene Names: ipaD
Find proteins for P18013 (Shigella flexneri)
Go to UniProtKB:  P18013
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
single-domain antibody JMK-E3
B, D, F, H, J
146N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.196 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 79.014α = 90.00
b = 163.350β = 90.00
c = 216.021γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
PDB_EXTRACTdata extraction
PHASERphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-08-30
    Type: Initial release