5VXJ
2.50 A resolution structure of IpaD from Shigella flexneri in complex with single-domain antibody JMK-E3
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | IpaD-like | 8042947 | 3001578 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | IpaD-like | 8042947 | 3001578 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | IpaD-like | 8042947 | 3001578 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | IpaD-like | 8042947 | 3001578 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | IpaD-like | 8042947 | 3001578 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF06511 | e5vxjA1 | A: alpha bundles | X: IpaD-like (From Topology) | H: IpaD-like (From Topology) | T: IpaD-like | F: PF06511 | ECOD (1.6) |
C | PF06511 | e5vxjC1 | A: alpha bundles | X: IpaD-like (From Topology) | H: IpaD-like (From Topology) | T: IpaD-like | F: PF06511 | ECOD (1.6) |
E | PF06511 | e5vxjE1 | A: alpha bundles | X: IpaD-like (From Topology) | H: IpaD-like (From Topology) | T: IpaD-like | F: PF06511 | ECOD (1.6) |
G | PF06511 | e5vxjG1 | A: alpha bundles | X: IpaD-like (From Topology) | H: IpaD-like (From Topology) | T: IpaD-like | F: PF06511 | ECOD (1.6) |
I | PF06511 | e5vxjI1 | A: alpha bundles | X: IpaD-like (From Topology) | H: IpaD-like (From Topology) | T: IpaD-like | F: PF06511 | ECOD (1.6) |
F | PF07686 | e5vxjF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
B | PF07686 | e5vxjB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
D | PF07686 | e5vxjD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
H | PF07686 | e5vxjH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
J | PF07686 | e5vxjJ1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.1710.10 | Mainly Alpha | Up-down Bundle | IpaD-like | IpaD-like | CATH (4.3.0) |
C | 1.20.1710.10 | Mainly Alpha | Up-down Bundle | IpaD-like | IpaD-like | CATH (4.3.0) |
E | 1.20.1710.10 | Mainly Alpha | Up-down Bundle | IpaD-like | IpaD-like | CATH (4.3.0) |
G | 1.20.1710.10 | Mainly Alpha | Up-down Bundle | IpaD-like | IpaD-like | CATH (4.3.0) |
I | 1.20.1710.10 | Mainly Alpha | Up-down Bundle | IpaD-like | IpaD-like | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
VH JMK-E3 | VH | Vicugna pacos (alpaca) | IGHV3S53*01, IGHJ4*01 | V-DOMAIN VH | IG | VH | IMGT (202419-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV1 | - | invasin ipad | SAbDab (2024-05-17) |