5VX4

VP8* of a G2P[4] Human Rotavirus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.171 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Glycan recognition in globally dominant human rotaviruses.

Hu, L.Sankaran, B.Laucirica, D.R.Patil, K.Salmen, W.Ferreon, A.C.M.Tsoi, P.S.Lasanajak, Y.Smith, D.F.Ramani, S.Atmar, R.L.Estes, M.K.Ferreon, J.C.Prasad, B.V.V.

(2018) Nat Commun 9: 2631-2631


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Outer capsid protein VP4
A
162Rotavirus AMutation(s): 0 
Gene Names: VP4
Find proteins for Q2VE61 (Rotavirus A)
Go to UniProtKB:  Q2VE61
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
TRS
Query on TRS

Download SDF File 
Download CCD File 
A
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.171 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 34.330α = 90.00
b = 56.590β = 93.52
c = 37.310γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
SCALAdata scaling
PHENIXrefinement
iMOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesAI36040
The Robert Welch foundationUnited StatesQ1279

Revision History 

  • Version 1.0: 2018-07-18
    Type: Initial release