5VQN

E119D mutant of 2009 H1N1 PA Endonuclease in complex with RO-7


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.002 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.197 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Identification of the I38T PA Substitution as a Resistance Marker for Next-Generation Influenza Virus Endonuclease Inhibitors.

Jones, J.C.Kumar, G.Barman, S.Najera, I.White, S.W.Webby, R.J.Govorkova, E.A.

(2018) MBio 9: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Polymerase acidic protein
A
197Influenza A virus (strain swl A/California/04/2009 H1N1)Mutation(s): 1 
Gene Names: PA
EC: 3.1.-.-
Find proteins for C3W5S0 (Influenza A virus (strain swl A/California/04/2009 H1N1))
Go to UniProtKB:  C3W5S0
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MN
Query on MN

Download SDF File 
Download CCD File 
A
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
R07
Query on R07

Download SDF File 
Download CCD File 
A
1-[(11S)-6,11-dihydrodibenzo[b,e]thiepin-11-yl]-5-hydroxy-3-[(2R)-1,1,1-trifluoropropan-2-yl]-2,3-dihydro-1H-pyrido[2,1-f][1,2,4]triazine-4,6-dione
RO-7
C24 H20 F3 N3 O3 S
XEOTUHPFOHTFEX-VLIAUNLRSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.002 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.197 
  • Space Group: I 4 2 2
Unit Cell:
Length (Å)Angle (°)
a = 89.848α = 90.00
b = 89.848β = 90.00
c = 133.261γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
HKLdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-2000data scaling
HKL-2000data reduction
SERGUIdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2017-05-09 
  • Released Date: 2018-04-11 
  • Deposition Author(s): Kumar, G., White, S.W.

Funding OrganizationLocationGrant Number
National Institutes of HealthUnited StatesHHSN272201400006C
Roche Innovation CenterSwitzerland--

Revision History 

  • Version 1.0: 2018-04-11
    Type: Initial release
  • Version 1.1: 2018-05-09
    Type: Data collection, Database references