5VP8

I38T mutant of 2009 H1N1 PA Endonuclease


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.200 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Identification of the I38T PA Substitution as a Resistance Marker for Next-Generation Influenza Virus Endonuclease Inhibitors.

Jones, J.C.Kumar, G.Barman, S.Najera, I.White, S.W.Webby, R.J.Govorkova, E.A.

(2018) MBio 9: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Polymerase acidic protein
A
197Influenza A virus (strain swl A/California/04/2009 H1N1)Mutation(s): 1 
Gene Names: PA
EC: 3.1.-.-
Find proteins for C3W5S0 (Influenza A virus (strain swl A/California/04/2009 H1N1))
Go to UniProtKB:  C3W5S0
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MN
Query on MN

Download SDF File 
Download CCD File 
A
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
9HD
Query on 9HD

Download SDF File 
Download CCD File 
A
1-[(3R,5S,7R)-1,5,7,9-tetrakis(2-oxopyrrolidin-1-yl)nonan-3-yl]-1,3-dihydro-2H-pyrrol-2-one
Polyvinylpyrrolidone K15
C29 H43 N5 O5
UBULRTDFHFSWCU-WXFUMESZSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.200 
  • Space Group: I 4 2 2
Unit Cell:
Length (Å)Angle (°)
a = 90.098α = 90.00
b = 90.098β = 90.00
c = 134.108γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
REFMACrefinement
PDB_EXTRACTdata extraction
HKLdata reduction
HKL-2000data scaling
HKLdata scaling
SERGUIdata collection
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2017-05-04 
  • Released Date: 2018-04-11 
  • Deposition Author(s): Kumar, G., White, S.W.

Funding OrganizationLocationGrant Number
National Institutes of HealthUnited StatesHHSN272201400006C
Roche Innovation CenterSwaziland--

Revision History 

  • Version 1.0: 2018-04-11
    Type: Initial release
  • Version 1.1: 2018-05-09
    Type: Data collection, Database references