Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: authors reported there is no experimental evidence

Macromolecule Content

• Total Structure Weight: 15912.62 
• Atom Count: 1040 
• Residue Count: 137 
• Unique protein chains: 1

5VM6

The hapten triclocarban bound to the single domain camelid nanobody VHH T10

• DOI: 10.2210/pdb5VM6/pdb

• Classification: UNKNOWN FUNCTION
• Expression System: Escherichia coli


• Deposited: 2017-04-26 Released: 2018-05-02 
• Deposition Author(s): Tabares-da Rosa, S., Gonzalez-Sapienza, G., Wilson, D.K.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.5 Å
• R-Value Free: 0.193 
• R-Value Work: 0.172 

Literature

Structure and specificity of several triclocarban-binding single domain camelid antibody fragments.

Tabares-da Rosa, S., Wogulis, L.A., Wogulis, M.D., Gonzalez-Sapienza, G., Wilson, D.K.

(2019) J. Mol. Recognit. 32: e2755-e2755

• PubMed: 30033524 
• Primary Citation of Related Structures:  
  5VM4, 5VM0, 5VLV, 5VL2

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
single domain camelid nanobody VHH T10	A	137	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
NA	A	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N
SO4	A	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
9EG	A	N-(4-chlorophenyl)-N'-(3,4-dichlorophenyl)urea C13 H9 Cl3 N2 O ICUTUKXCWQYESQ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.5 Å
• R-Value Free: 0.193 
• R-Value Work: 0.172 
• Space Group: P 1 2₁ 1

Unit Cell:

Length (Å)	Angle (°)
a = 36.769	α = 90.00
b = 36.387	β = 111.18
c = 44.598	γ = 90.00

Software Package:

Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
PHASER	phasing
XDS	data reduction

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2017-04-26 
• Released Date: 2018-05-02 
• Deposition Author(s): Tabares-da Rosa, S., Gonzalez-Sapienza, G., Wilson, D.K.

Revision History 

• Version 1.0: 2018-05-02
  Type: Initial release
• Version 1.1: 2018-11-21
  Type: Data collection, Database references
• Version 1.2: 2018-12-26
  Type: Data collection, Database references