5VFE

Synaptotagmin 1 C2A domain, lead-bound


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.38 Å
  • R-Value Free: 0.178 
  • R-Value Work: 0.144 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Synaptotagmin 1 C2A domain, lead-bound

Taylor, A.B.Hart, P.J.Igumenova, T.I.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Synaptotagmin-1
A, B
126Mus musculusMutation(s): 0 
Gene Names: Syt1
Find proteins for P46096 (Mus musculus)
Go to UniProtKB:  P46096
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
PB
Query on PB

Download SDF File 
Download CCD File 
A, B
LEAD (II) ION
Pb
RVPVRDXYQKGNMQ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.38 Å
  • R-Value Free: 0.178 
  • R-Value Work: 0.144 
  • Space Group: P 32
Unit Cell:
Length (Å)Angle (°)
a = 55.040α = 90.00
b = 55.040β = 90.00
c = 77.160γ = 120.00
Software Package:
Software NamePurpose
XDSdata scaling
XDSdata reduction
PHENIXrefinement
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-04-11
    Type: Initial release