Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 30002.60 
• Atom Count: 2133 
• Residue Count: 258 
• Unique protein chains: 1

5VAS

Pekin duck egg lysozyme isoform III (DEL-III), orthorhombic form

• DOI: 10.2210/pdb5VAS/pdb

• Classification: HYDROLASE
• Organism(s): Anas platyrhynchos


• Deposited: 2017-03-27 Released: 2018-04-18 
• Deposition Author(s): Christie, M., Christ, D., Langley, D.B.
• Funding Organization(s): National Health and Medical Research Council (Australia) 

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.4 Å
• R-Value Free: 0.169 
• R-Value Work: 0.144 

Literature

Crystal structures of lysozymes from Pekin and Muscovy duck eggs

Langley, D.B., Christie, M., Christ, D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Lysozyme	A, B	129	Anas platyrhynchos	Mutation(s): 0  Gene Names: LYZ EC: 3.2.1.17
Find proteins for U3J0P1 (Anas platyrhynchos) Go to Gene View: LYZ Go to UniProtKB:  U3J0P1

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
PO4	A, B	PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K
GOL	A, B	GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.4 Å
• R-Value Free: 0.169 
• R-Value Work: 0.144 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length (Å)	Angle (°)
a = 44.005	α = 90.00
b = 58.350	β = 90.00
c = 107.480	γ = 90.00

Software Package:

Software Name	Purpose
PHASER	phasing
Aimless	data scaling
MOSFLM	data collection
MOSFLM	data reduction
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2017-03-27 
• Released Date: 2018-04-18 
• Deposition Author(s): Christie, M., Christ, D., Langley, D.B.

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Funding Organization	Location	Grant Number
National Health and Medical Research Council (Australia)	Australia	--

Revision History 

• Version 1.0: 2018-04-18
  Type: Initial release