Biological Assembly 1  

 3D View: Structure | Electron Density

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Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - AB 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

 3D View: Structure | Electron Density

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Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - AB 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 90280.14 
• Atom Count: 6364 
• Residue Count: 776 
• Unique protein chains: 3

5V5L

Crystal structure of HLA-B*5801 complex with HIV-1 gag derived peptide TW10

• DOI: 10.2210/pdb5V5L/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Homo sapiens, Human immunodeficiency virus type 1 group M subtype B (isolate BH10)
• Expression System: Escherichia coli BL21(DE3)


• Deposited: 2017-03-14 Released: 2017-06-14 
• Deposition Author(s): Li, X., Wang, J.-H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.002 Å
• R-Value Free: 0.214 
• R-Value Work: 0.188 

Literature

Crystal structure of HLA-B*5801 with a TW10 HIV Gag epitope reveals a novel mode of peptide presentation.

Li, X., Lamothe, P.A., Walker, B.D., Wang, J.H.

(2017) Cell. Mol. Immunol. 14: 631-634

• PubMed: 28552904 
• DOI: 10.1038/cmi.2017.24
• Primary Citation of Related Structures:  
  5V5M

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
HLA class I histocompatibility antigen, B-58 alpha chain	A, C	278	Homo sapiens	Mutation(s): 0  Gene Names: HLA-B (HLAB)
Find proteins for P01889 (Homo sapiens) Go to Gene View: HLA-B Go to UniProtKB:  P01889

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
Beta-2-microglobulin	B, D	100	Homo sapiens	Mutation(s): 0  Gene Names: B2M
Find proteins for P61769 (Homo sapiens) Go to Gene View: B2M Go to UniProtKB:  P61769

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details
TW10	E, F	10	Human immunodeficiency virus type 1 group M subtype B (isolate BH10)	Mutation(s): 0  Gene Names: gag-pol
Find proteins for P03366 (Human immunodeficiency virus type 1 group M subtype B (isolate BH10)) Go to UniProtKB:  P03366

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.002 Å
• R-Value Free: 0.214 
• R-Value Work: 0.188 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length (Å)	Angle (°)
a = 69.148	α = 90.00
b = 85.632	β = 90.00
c = 158.645	γ = 90.00

Software Package:

Software Name	Purpose
PHENIX	phasing
PHENIX	refinement
HKL-3000	data scaling
HKL-3000	data reduction

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2017-03-14 
• Released Date: 2017-06-14 
• Deposition Author(s): Li, X., Wang, J.-H.

Revision History 

• Version 1.0: 2017-06-14
  Type: Initial release
• Version 1.1: 2017-07-12
  Type: Database references