5V4H

Ruthenium(II)(cymene)(chlorido)2-lysozyme adduct formed when ruthenium(II)(cymene)(bromido)2 underwent ligand exchange, resulting in one binding site


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.22 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.154 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The metalation of hen egg white lysozyme impacts protein stability as shown by ion mobility mass spectrometry, differential scanning calorimetry, and X-ray crystallography.

Sullivan, M.P.Groessl, M.Meier, S.M.Kingston, R.L.Goldstone, D.C.Hartinger, C.G.

(2017) Chem. Commun. (Camb.) 53: 4246-4249

  • DOI: 10.1039/c6cc10150j
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Metalation of hen egg white lysozyme (HEWL) with organometallics was studied with physicochemical methods in solid state, solution and the gas phase. While metalation did not affect the crystal structure of HEWL significantly, protein destabilisation ...

    Metalation of hen egg white lysozyme (HEWL) with organometallics was studied with physicochemical methods in solid state, solution and the gas phase. While metalation did not affect the crystal structure of HEWL significantly, protein destabilisation was detected in gas phase and solution.


    Organizational Affiliation

    School of Chemical Sciences, University of Auckland, Private Bag 92019, Auckland, 1142, New Zealand. c.hartinger@auckland.ac.nz.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Lysozyme C
A
129Gallus gallusMutation(s): 0 
Gene Names: LYZ
EC: 3.2.1.17
Find proteins for P00698 (Gallus gallus)
Go to Gene View: LYZ
Go to UniProtKB:  P00698
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
RU7
Query on RU7

Download SDF File 
Download CCD File 
A
PARA-CYMENE RUTHENIUM CHLORIDE
C10 H14 Cl2 Ru
UCXDWSTYBSBFFB-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.22 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.154 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 80.320α = 90.00
b = 80.320β = 90.00
c = 36.590γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
PHASERphasing
Cootmodel building
Aimlessdata scaling
PDB_EXTRACTdata extraction
iMOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-04-05
    Type: Initial release
  • Version 1.1: 2017-04-12
    Type: Database references
  • Version 1.2: 2017-04-19
    Type: Database references