5UTE | pdb_00005ute

Kaposi's Sarcoma Herpesvirus Protease in Complex with Allosteric Inhibitor

• PDB DOI: https://doi.org/10.2210/pdb5UTE/pdb

• Classification: VIRAL PROTEIN/INHIBITOR
• Organism(s): Human gammaherpesvirus 8
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2017-02-14 Released: 2017-03-15 
• Deposition Author(s): Acker, T.M., Gable, J., Bohn, M.-F., Craik, C.S.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.05 Å
• R-Value Free: 
  0.236 (Depositor), 0.240 (DCC) 
• R-Value Work: 
  0.183 (Depositor), 0.180 (DCC) 
• R-Value Observed: 
  0.185 (Depositor) 

Starting Model: experimental

Literature

Kaposi's Sarcoma Herpesvirus Protease in Complex with Allosteric Inhibitor

Acker, T.M., Craik, C.S., Bohn, M.-F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 43.76 kDa 
• Atom Count: 3,290 
• Modeled Residue Count: 375 
• Deposited Residue Count: 386 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ORF 17	A, B	193	Human gammaherpesvirus 8	Mutation(s): 0  Gene Names: ORF17
UniProt
Find proteins for O40922 (Human herpesvirus 8) Explore O40922  Go to UniProtKB:  O40922

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
8M4	C [auth A], D [auth A], E [auth B]	4-{[6-(cyclohexylmethyl)pyridine-2-carbonyl]amino}-3-[(4-methoxyphenyl)amino]benzoic acid C27 H29 N3 O4 HKIXXPHCIIDZPF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.05 Å
• R-Value Free:  0.236 (Depositor), 0.240 (DCC) 
• R-Value Work:  0.183 (Depositor), 0.180 (DCC) 
• R-Value Observed: 0.185 (Depositor) 

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 68.33	α = 90
b = 93.328	β = 90
c = 119.147	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
SCALA	data scaling
PHENIX	phasing
MOSFLM	data reduction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-03-15 
Deposition Author(s): Acker, T.M., Gable, J., Bohn, M.-F., Craik, C.S.

Revision History  

• Version 1.0: 2017-03-15
  Type: Initial release
  
• Version 1.1: 2023-10-04
  Changes: Data collection, Database references, Refinement description