5U6A

CRYSTAL STRUCTURE OF I83E MEDITOPE-ENABLED TRASTUZUMAB WITH AZIDO-PEG3-MEDITOPE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.159 
  • R-Value Observed: 0.161 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal Structure Of I83E Meditope-Enabled Trastuzumab With Azido-PEG3-Meditope

Williams, J.C.Bzymek, K.P.Pucket, J.Avery, K.A.Ma, Y.Xie, J.Zer, C.Horne, D.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Light ChainA214Homo sapiensMutation(s): 0 
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  • Reference Sequence

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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Heavy ChainB223Homo sapiensMutation(s): 0 
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  • Reference Sequence

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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Protein LE63Finegoldia magnaMutation(s): 5 
Find proteins for Q51918 (Finegoldia magna)
Explore Q51918 
Go to UniProtKB:  Q51918
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  • Reference Sequence

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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Immunoglobulin G binding protein AC54Staphylococcus aureusMutation(s): 0 
Gene Names: spa
Find proteins for P02976 (Staphylococcus aureus (strain NCTC 8325))
Explore P02976 
Go to UniProtKB:  P02976
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  • Reference Sequence
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
meditope peptideD14synthetic constructMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MRY
Query on MRY

Download CCD File 
B
MESO-ERYTHRITOL
C4 H10 O4
UNXHWFMMPAWVPI-ZXZARUISSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
2GX
Query on 2GX
DL-PEPTIDE LINKINGC15 H15 N O2PHE
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.159 
  • R-Value Observed: 0.161 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 53.25α = 90
b = 105.17β = 90
c = 117.07γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-03-14
    Type: Initial release
  • Version 1.1: 2018-03-28
    Changes: Data collection, Database references, Derived calculations, Source and taxonomy, Structure summary
  • Version 1.2: 2018-04-18
    Changes: Data collection