5TXK

CRYSTAL STRUCTURE OF USP35 C450S IN COMPLEX WITH UBIQUITIN


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.84 Å
  • R-Value Free: 0.183 
  • R-Value Work: 0.160 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Expansion of DUB functionality generated by alternative isoforms - USP35, a case study.

Leznicki, P.Natarajan, J.Bader, G.Spevak, W.Schlattl, A.Abdul Rehman, S.A.Pathak, D.Weidlich, S.Zoephel, A.Bordone, M.C.Barbosa-Morais, N.L.Boehmelt, G.Kulathu, Y.

(2018) J. Cell. Sci. 131: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin carboxyl-terminal hydrolase 35,Ubiquitin carboxyl-terminal hydrolase 35
A
372Homo sapiensMutation(s): 1 
Gene Names: USP35 (KIAA1372, USP34)
EC: 3.4.19.12
Find proteins for Q9P2H5 (Homo sapiens)
Go to Gene View: USP35
Go to UniProtKB:  Q9P2H5
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Polyubiquitin-B
B
76Homo sapiensMutation(s): 0 
Gene Names: UBB
Find proteins for P0CG47 (Homo sapiens)
Go to Gene View: UBB
Go to UniProtKB:  P0CG47
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.84 Å
  • R-Value Free: 0.183 
  • R-Value Work: 0.160 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 104.235α = 90.00
b = 104.235β = 90.00
c = 106.381γ = 90.00
Software Package:
Software NamePurpose
BUSTER-TNTrefinement
XDSdata reduction
AutoPROCdata scaling
PHENIXphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-05-09
    Type: Initial release
  • Version 1.1: 2018-05-30
    Type: Data collection, Database references