Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

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Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - AB 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 50855.79 
• Atom Count: 3192 
• Residue Count: 448 
• Unique protein chains: 2

5TXK

CRYSTAL STRUCTURE OF USP35 C450S IN COMPLEX WITH UBIQUITIN

• DOI: 10.2210/pdb5TXK/pdb

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): 1 


• Deposited: 2016-11-17 Released: 2018-05-09 
• Deposition Author(s): Bader, G., Weiss-Puxbaum, A., Zoephel, A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.84 Å
• R-Value Free: 0.183 
• R-Value Work: 0.160 

Literature

Expansion of DUB functionality generated by alternative isoforms - USP35, a case study.

Leznicki, P., Natarajan, J., Bader, G., Spevak, W., Schlattl, A., Abdul Rehman, S.A., Pathak, D., Weidlich, S., Zoephel, A., Bordone, M.C., Barbosa-Morais, N.L., Boehmelt, G., Kulathu, Y.

(2018) J. Cell. Sci. 131: --

• PubMed: 29685892 

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Ubiquitin carboxyl-terminal hydrolase 35,Ubiquitin carboxyl-terminal hydrolase 35	A	372	Homo sapiens	Mutation(s): 1  Gene Names: USP35 (KIAA1372, USP34) EC: 3.4.19.12
Find proteins for Q9P2H5 (Homo sapiens) Go to Gene View: USP35 Go to UniProtKB:  Q9P2H5

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
Polyubiquitin-B	B	76	Homo sapiens	Mutation(s): 0  Gene Names: UBB
Find proteins for P0CG47 (Homo sapiens) Go to Gene View: UBB Go to UniProtKB:  P0CG47

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
ZN	A	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
SO4	A	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
EDO	A, B	1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.84 Å
• R-Value Free: 0.183 
• R-Value Work: 0.160 
• Space Group: P 4₃ 2₁ 2

Unit Cell:

Length (Å)	Angle (°)
a = 104.235	α = 90.00
b = 104.235	β = 90.00
c = 106.381	γ = 90.00

Software Package:

Software Name	Purpose
BUSTER-TNT	refinement
XDS	data reduction
AutoPROC	data scaling
PHENIX	phasing
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2016-11-17 
• Released Date: 2018-05-09 
• Deposition Author(s): Bader, G., Weiss-Puxbaum, A., Zoephel, A.

Revision History 

• Version 1.0: 2018-05-09
  Type: Initial release
• Version 1.1: 2018-05-30
  Type: Data collection, Database references