Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 37812.81 
• Atom Count: 7890 
• Residue Count: 321 
• Unique protein chains: 1

5QDI

PanDDA analysis group deposition -- Crystal structure of PTP1B in complex with compound_FMOPL000157a

• DOI: 10.2210/pdb5QDI/pdb
• Deposition Group: G_1002043 (changed state)

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): 2 


• Deposited: 2018-08-30 Released: 2018-10-10 
• Deposition Author(s): Keedy, D.A., Hill, Z.B., Biel, J.T., Kang, E., Rettenmaier, T.J., Brandao-Neto, J., von Delft, F., Wells, J.A., Fraser, J.S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.623 Å
• R-Value Free: 0.218 
• R-Value Work: 0.188 

Literature

Allosteric inhibition of a dynamic enzyme from multitemperature crystallography, fragment screening, and covalent tethering

Keedy, D.A., Hill, Z.B., Biel, J.T., Kang, E., Rettenmaier, T.J., Brandao-Neto, J., von Delft, F., Wells, J.A., Fraser, J.S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Tyrosine-protein phosphatase non-receptor type 1	A	321	Homo sapiens	Mutation(s): 2  Gene Names: PTPN1 (PTP1B) EC: 3.1.3.48
Find proteins for P18031 (Homo sapiens) Go to Gene View: PTPN1 Go to UniProtKB:  P18031

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
JFM	A	N-(2-phenylethyl)methanesulfonamide C9 H13 N O2 S JGDDFCYMSLNOGJ-UHFFFAOYSA-N
TRS	A	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRIS BUFFER C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.623 Å
• R-Value Free: 0.218 
• R-Value Work: 0.188 
• Space Group: P 3₁ 2 1

Unit Cell:

Length (Å)	Angle (°)
a = 89.877	α = 90.00
b = 89.877	β = 90.00
c = 106.634	γ = 120.00

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction
XDS	data reduction
PHENIX	refinement

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2018-08-30 
• Released Date: 2018-10-10 
• Deposition Author(s): Keedy, D.A., Hill, Z.B., Biel, J.T., Kang, E., Rettenmaier, T.J., Brandao-Neto, J., von Delft, F., Wells, J.A., Fraser, J.S.

Revision History 

• Version 1.0: 2018-10-10
  Type: Initial release