Macromolecule Content

Total Structure Weight: 37866.25
Atom Count: 7890
Residue Count: 321
Unique protein chains: 1

5QDI

PanDDA analysis group deposition -- Crystal structure of PTP1B in complex with compound_FMOPL000157a

DOI: 10.2210/pdb5QDI/pdb
Deposition Group: G_1002043 (changed state)

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): 2

Deposited: 2018-08-30 Released: 2018-10-10
Deposition Author(s): Keedy, D.A., Hill, Z.B., Biel, J.T., Kang, E., Rettenmaier, T.J., Brandao-Neto, J., von Delft, F., Wells, J.A., Fraser, J.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.623 Å
R-Value Free: 0.218
R-Value Work: 0.188

wwPDB Validation3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

An expanded allosteric network in PTP1B by multitemperature crystallography, fragment screening, and covalent tethering.

Keedy, D.A., Hill, Z.B., Biel, J.T., Kang, E., Rettenmaier, T.J., Brandao-Neto, J., Pearce, N.M., von Delft, F., Wells, J.A., Fraser, J.S.

(2018) Elife 7: --

PubMed: 29877794 Search on PubMed
Primary Citation of Related Structures:
6BAI, 6B95, 6B90, 6B8Z, 6B8X, 6B8T, 6B8E, 5QGF, 5QGE, 5QGD, 5QGC, 5QGB, 5QGA, 5QG9, 5QG8, 5QG7, 5QG6, 5QG5, 5QG4, 5QG3, 5QG2, 5QG1, 5QG0, 5QFZ, 5QFY, 5QFX, 5QFW, 5QFV, 5QFU, 5QFT, 5QFS, 5QFR, 5QFQ, 5QFP, 5QFO, 5QFN, 5QFM, 5QFL, 5QFK, 5QFJ,
6BAI, 6B95, 6B90, 6B8Z, 6B8X, 6B8T, 6B8E, 5QGF, 5QGE, 5QGD, 5QGC, 5QGB, 5QGA, 5QG9, 5QG8, 5QG7, 5QG6, 5QG5, 5QG4, 5QG3, 5QG2, 5QG1, 5QG0, 5QFZ, 5QFY, 5QFX, 5QFW, 5QFV, 5QFU, 5QFT, 5QFS, 5QFR, 5QFQ, 5QFP, 5QFO, 5QFN, 5QFM, 5QFL, 5QFK, 5QFJ, 5QFI, 5QFH, 5QFG, 5QFF, 5QFE, 5QFD, 5QFC, 5QFB, 5QFA, 5QF9, 5QF8, 5QF7, 5QF6, 5QF5, 5QF4, 5QF3, 5QF2, 5QF1, 5QF0, 5QEZ, 5QEY, 5QEX, 5QEW, 5QEV, 5QEU, 5QET, 5QES, 5QER, 5QEQ, 5QEP, 5QEO, 5QEN, 5QEM, 5QEL, 5QEK, 5QEJ, 5QEI, 5QEH, 5QEG, 5QEF, 5QEE, 5QED, 5QEC, 5QEB, 5QEA, 5QE9, 5QE8, 5QE7, 5QE5, 5QE6, 5QE4, 5QE3, 5QE2, 5QE1, 5QE0, 5QDZ, 5QDY, 5QDX, 5QDW, 5QDV, 5QDU, 5QDT, 5QDS, 5QDR, 5QDQ, 5QDP, 5QDO, 5QDN, 5QDM, 5QDL, 5QDK, 5QDJ, 5QDH, 5QDG, 5QDF, 5QDE

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Tyrosine-protein phosphatase non-receptor type 1	A	321	Homo sapiens	Mutation(s): 2 Gene Names: PTPN1 (PTP1B) EC: 3.1.3.48
Find proteins for P18031 (Homo sapiens) Go to Gene View: PTPN1 Go to UniProtKB: P18031
Protein Feature View Full Protein Feature View for P18031

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions	3D Interactions
JFM Query on JFM Download SDF File Download CCD File	A	N-(2-phenylethyl)methanesulfonamide C₉ H₁₃ N O₂ S JGDDFCYMSLNOGJ-UHFFFAOYSA-N		Ligand Interaction
TRS Query on TRS Download SDF File Download CCD File	A	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRIS BUFFER C₄ H₁₂ N O₃ LENZDBCJOHFCAS-UHFFFAOYSA-O		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.623 Å
R-Value Free: 0.218
R-Value Work: 0.188
Space Group: P 3₁ 2 1

Unit Cell:

Length (Å)	Angle (°)
a = 89.877	α = 90.00
b = 89.877	β = 90.00
c = 106.634	γ = 120.00

Software Package:

Software Name	Purpose
PDB_EXTRACT	data extraction
PHENIX	refinement
XSCALE	data scaling
PHASER	phasing
XDS	data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots

Entry History

Deposition Data

Deposited Date: 2018-08-30
Released Date: 2018-10-10
Deposition Author(s): Keedy, D.A., Hill, Z.B., Biel, J.T., Kang, E., Rettenmaier, T.J., Brandao-Neto, J., von Delft, F., Wells, J.A., Fraser, J.S.

Revision History

Version 1.0: 2018-10-10
Type: Initial release
Version 1.1: 2019-02-06
Type: Data collection, Database references, Structure summary

The RCSB PDB is funded by a grant (DBI-1338415) from the National Science Foundation, the National Institutes of Health, and the US Department of Energy.