5OVH

Ras guanine nucleotide exchange factor SOS1 (Rem-cdc25) in complex with small molecule inhibitor compound 21


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.330 
  • R-Value Work: 0.260 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Discovery of potent SOS1 inhibitors that block RAS activation via disruption of the RAS-SOS1 interaction.

Hillig, R.C.Sautier, B.Schroeder, J.Moosmayer, D.Hilpmann, A.Stegmann, C.M.Werbeck, N.D.Briem, H.Boemer, U.Weiske, J.Badock, V.Mastouri, J.Petersen, K.Siemeister, G.Kahmann, J.D.Wegener, D.Bohnke, N.Eis, K.Graham, K.Wortmann, L.von Nussbaum, F.Bader, B.

(2019) Proc. Natl. Acad. Sci. U.S.A. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Son of sevenless homolog 1
A
490Homo sapiensMutation(s): 4 
Gene Names: SOS1
Find proteins for Q07889 (Homo sapiens)
Go to Gene View: SOS1
Go to UniProtKB:  Q07889
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
AWW
Query on AWW

Download SDF File 
Download CCD File 
A
[2-[5-[(1~{R})-1-[(6,7-dimethoxy-2-methyl-5,8-dihydroquinazolin-4-yl)amino]ethyl]thiophen-2-yl]phenyl]methanol
C24 H27 N3 O3 S
JDPGKGHUTNUNTG-CQSZACIVSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.330 
  • R-Value Work: 0.260 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 41.413α = 90.00
b = 85.362β = 90.00
c = 176.221γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
REFMACrefinement
XDSdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2019-02-06
    Type: Initial release