5OU9

Crystal structure of Glycoprotein VI in complex with collagen-peptide (GPO)3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.228 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural insights into collagen-binding by platelet receptor Glycoprotein VI

Feitsma, L.J.Brondijk, T.H.C.Jarvis, G.Hagemans, D.Bihan, D.Jerah, N.Versteeg, M.Farndale, R.W.Huizinga, E.G.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Platelet glycoprotein VI
A, B
181Homo sapiensMutation(s): 0 
Gene Names: GP6
Find proteins for Q9HCN6 (Homo sapiens)
Go to Gene View: GP6
Go to UniProtKB:  Q9HCN6
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
(GPO)3
C, D, E
21Homo sapiensMutation(s): 0 
Gene Names: COL1A1
Find proteins for P02452 (Homo sapiens)
Go to Gene View: COL1A1
Go to UniProtKB:  P02452
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
PG4
Query on PG4

Download SDF File 
Download CCD File 
A, B
TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
HYP
Query on HYP
C, D, E
L-PEPTIDE LINKINGC5 H9 N O3PRO
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.228 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 59.720α = 90.00
b = 59.720β = 90.00
c = 319.720γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
Aimlessdata scaling
iMOSFLMdata reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Netherlands Organization for Scientific ResearchNetherlandsECHO 700.58.006

Revision History 

  • Version 1.0: 2018-09-05
    Type: Initial release