Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: mass spectrometry

Macromolecule Content

• Total Structure Weight: 34539.11 
• Atom Count: 2189 
• Residue Count: 303 
• Unique protein chains: 1

5OO1

Cdk2(F80C, C177A) covalent adduct with C37 at F80C

• DOI: 10.2210/pdb5OO1/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): 2 


• Deposited: 2017-08-04 Released: 2018-08-29 
• Deposition Author(s): Craven, G., Morgan, R.M.L., Mann, D.J.
• Funding Organization(s): Engineering and Physical Sciences Research Council; Cancer and Polio Research Fund 

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2 Å
• R-Value Free: 0.236 
• R-Value Work: 0.185 

Literature

High-throughput kinetic analysis for target-directed covalent ligand discovery

Craven, G., Affron, D.P., Allen, C.E., Greener, J.G., Morgan, R.M.L., Matthies, S., Armstrong, A., Mann, D.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Cyclin-dependent kinase 2	A	303	Homo sapiens	Mutation(s): 2  Gene Names: CDK2 (CDKN2) EC: 2.7.11.22
Find proteins for P24941 (Homo sapiens) Go to Gene View: CDK2 Go to UniProtKB:  P24941

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
9Z2	A	~{N}-(4-pyrimidin-2-ylphenyl)propanamide C13 H13 N3 O AYWSBVNLDJWGBC-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2 Å
• R-Value Free: 0.236 
• R-Value Work: 0.185 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length (Å)	Angle (°)
a = 49.576	α = 90.00
b = 66.486	β = 90.00
c = 70.053	γ = 90.00

Software Package:

Software Name	Purpose
REFMAC	refinement
PHASER	phasing
xia2	data scaling
xia2	data reduction

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2017-08-04 
• Released Date: 2018-08-29 
• Deposition Author(s): Craven, G., Morgan, R.M.L., Mann, D.J.

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Funding Organization	Location	Grant Number
Engineering and Physical Sciences Research Council	United Kingdom	EP/F500416/1
Cancer and Polio Research Fund	United Kingdom	--

Revision History 

• Version 1.0: 2018-08-29
  Type: Initial release