5OO1

Cdk2(F80C, C177A) covalent adduct with C37 at F80C


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.185 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

High-throughput kinetic analysis for target-directed covalent ligand discovery

Craven, G.Affron, D.P.Allen, C.E.Greener, J.G.Morgan, R.M.L.Matthies, S.Armstrong, A.Mann, D.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cyclin-dependent kinase 2
A
303Homo sapiensMutation(s): 2 
Gene Names: CDK2 (CDKN2)
EC: 2.7.11.22
Find proteins for P24941 (Homo sapiens)
Go to Gene View: CDK2
Go to UniProtKB:  P24941
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
9Z2
Query on 9Z2

Download SDF File 
Download CCD File 
A
~{N}-(4-pyrimidin-2-ylphenyl)propanamide
C13 H13 N3 O
AYWSBVNLDJWGBC-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.185 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 49.576α = 90.00
b = 66.486β = 90.00
c = 70.053γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
PHASERphasing
xia2data scaling
xia2data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Engineering and Physical Sciences Research CouncilUnited KingdomEP/F500416/1
Cancer and Polio Research FundUnited Kingdom--

Revision History 

  • Version 1.0: 2018-08-29
    Type: Initial release