5OJ4

Mycobacterial hydrolase complex 8.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.173 
  • R-Value Work: 0.144 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural characterization of mycobacterial hydrolase

Cereija, T.B.Alarico, S.Lourenco, E.C.Ventura, R.Empadinhas, N.Macedo-Ribeiro, S.Pereira, P.J.B.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hydrolase
A, B
448Mycobacterium hassiacum (strain DSM 44199 / CIP 105218 / JCM 12690 / 3849)Mutation(s): 1 
Find proteins for K5BDL0 (Mycobacterium hassiacum (strain DSM 44199 / CIP 105218 / JCM 12690 / 3849))
Go to UniProtKB:  K5BDL0
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
2M8
Query on 2M8

Download SDF File 
Download CCD File 
A, B
2-O-ALPHA-MANNOSYL-D-GLYCERATE
C9 H16 O9
DDXCFDOPXBPUJC-SAYMMRJXSA-N
 Ligand Interaction
GLY
Query on GLY

Download SDF File 
Download CCD File 
A
GLYCINE
C2 H5 N O2
DHMQDGOQFOQNFH-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
PEG
Query on PEG

Download SDF File 
Download CCD File 
A
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.173 
  • R-Value Work: 0.144 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 85.329α = 90.00
b = 159.632β = 90.00
c = 91.169γ = 90.00
Software Package:
Software NamePurpose
XDSdata scaling
PHASERphasing
PHENIXrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Fundacao para a Ciencia e a TecnologiaPortugalPOCI-01-0145-FEDER-007274
Norte Portugal Regional Operational Programme NORTE 2020PortugalNorte-01-0145-FEDER-000012

Revision History 

  • Version 1.0: 2018-08-08
    Type: Initial release
  • Version 1.1: 2018-09-12
    Type: Data collection, Database references