5O42

17beta-hydroxysteroid dehydrogenase 14 variant T205 in complex with a non-steroidal 2,6-pyridinketone inhibitor.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.191 
  • R-Value Work: 0.146 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure-based design and profiling of novel 17 beta-HSD14 inhibitors.

Braun, F.Bertoletti, N.Moller, G.Adamski, J.Frotscher, M.Guragossian, N.Madeira Girio, P.A.Le Borgne, M.Ettouati, L.Falson, P.Muller, S.Vollmer, G.Heine, A.Klebe, G.Marchais-Oberwinkler, S.

(2018) Eur J Med Chem 155: 61-76


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
17-beta-hydroxysteroid dehydrogenase 14
A
274Homo sapiensMutation(s): 0 
Gene Names: HSD17B14 (DHRS10, SDR3, SDR47C1)
EC: 1.1.1.-
Find proteins for Q9BPX1 (Homo sapiens)
Go to Gene View: HSD17B14
Go to UniProtKB:  Q9BPX1
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
9JW
Query on 9JW

Download SDF File 
Download CCD File 
A
2-fluoranyl-3-[6-[1-(4-fluoranyl-3-oxidanyl-phenyl)ethenyl]pyridin-2-yl]phenol
C19 H13 F2 N O2
LSHVGZUGKOCADJ-UHFFFAOYSA-N
 Ligand Interaction
BGC
Query on BGC

Download SDF File 
Download CCD File 
A
BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
 Ligand Interaction
NAD
Query on NAD

Download SDF File 
Download CCD File 
A
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.191 
  • R-Value Work: 0.146 
  • Space Group: I 4 2 2
Unit Cell:
Length (Å)Angle (°)
a = 91.461α = 90.00
b = 91.461β = 90.00
c = 133.087γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
XDSdata scaling
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research FoundationGermanyMA-5287/1-1
German Research FoundationGermanyKL-1204/15-1

Revision History 

  • Version 1.0: 2018-06-06
    Type: Initial release
  • Version 1.1: 2018-06-13
    Type: Data collection, Database references