5O42
17beta-hydroxysteroid dehydrogenase 14 variant T205 in complex with a non-steroidal 2,6-pyridinketone inhibitor.
- PDB DOI: https://doi.org/10.2210/pdb5O42/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21
- Mutation(s): No 
- Deposited: 2017-05-25 Released: 2018-06-06 
- Funding Organization(s): German Research Foundation
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.76 Å
- R-Value Free: 0.191 
- R-Value Work: 0.146 
- R-Value Observed: 0.148 
This is version 1.3 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
17-beta-hydroxysteroid dehydrogenase 14 | 274 | Homo sapiens | Mutation(s): 0  Gene Names: HSD17B14, DHRS10, SDR3, SDR47C1, UNQ502/PRO474 EC: 1.1.1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9BPX1 (Homo sapiens) Explore Q9BPX1  Go to UniProtKB:  Q9BPX1 | |||||
PHAROS:  Q9BPX1 GTEx:  ENSG00000087076  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9BPX1 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAD Query on NAD | B [auth A] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N | |||
9JW Query on 9JW | E [auth A] | 2-fluoranyl-3-[6-[1-(4-fluoranyl-3-oxidanyl-phenyl)ethenyl]pyridin-2-yl]phenol C19 H13 F2 N O2 LSHVGZUGKOCADJ-UHFFFAOYSA-N | |||
BGC Query on BGC | D [auth A] | beta-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-VFUOTHLCSA-N | |||
NA Query on NA | C [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.76 Å
- R-Value Free: 0.191 
- R-Value Work: 0.146 
- R-Value Observed: 0.148 
- Space Group: I 4 2 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 91.461 | α = 90 |
b = 91.461 | β = 90 |
c = 133.087 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-06-06  Deposition Author(s): Bertoletti, N., Heine, A., Braun, F., Klebe, G., Marchais-Oberwinkler, S.
Funding Organization | Location | Grant Number |
---|---|---|
German Research Foundation | Germany | MA-5287/1-1 |
German Research Foundation | Germany | KL-1204/15-1 |
Revision History (Full details and data files)
- Version 1.0: 2018-06-06
Type: Initial release - Version 1.1: 2018-06-13
Changes: Data collection, Database references - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.3: 2024-01-17
Changes: Data collection, Database references, Refinement description, Structure summary