5O3F

Human Brd2(BD2) mutant in complex with ET-Am1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.173 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Optimization of a "bump-and-hole" approach to allele-selective BET bromodomain inhibition.

Runcie, A.C.Zengerle, M.Chan, K.H.Testa, A.van Beurden, L.Baud, M.G.J.Epemolu, O.Ellis, L.C.J.Read, K.D.Coulthard, V.Brien, A.Ciulli, A.

(2018) Chem Sci 9: 2452-2468


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Bromodomain-containing protein 2
A
114Homo sapiensMutations: V42L
Gene Names: BRD2 (KIAA9001, RING3)
Find proteins for P25440 (Homo sapiens)
Go to Gene View: BRD2
Go to UniProtKB:  P25440
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
DQW
Query on DQW

Download SDF File 
Download CCD File 
A
(2~{S})-1-[(2~{S})-2-oxidanylpropoxy]propan-2-ol
C6 H14 O3
AZUXKVXMJOIAOF-WDSKDSINSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
9HT
Query on 9HT

Download SDF File 
Download CCD File 
A
(2~{R})-2-[(4~{S})-6-(4-chlorophenyl)-8-methoxy-1-methyl-4~{H}-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]-~{N}-ethyl-butanamide
C24 H26 Cl N5 O2
CNRGCXBSRCBICF-GCJKJVERSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.173 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 51.965α = 90.00
b = 71.548β = 90.00
c = 31.704γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
PHENIXrefinement
XDSdata reduction
PHENIXphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationCountryGrant Number
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/J001201/2
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/G023123/2
European Research CouncilERC-2012-StG-311460 DrugE3CRLs

Revision History 

  • Version 1.0: 2018-02-14
    Type: Initial release
  • Version 1.1: 2018-05-16
    Type: Data collection, Database references