5O38

Human Brd2(BD2) mutant in free form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.141 
  • R-Value Work: 0.118 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Optimization of a "bump-and-hole" approach to allele-selective BET bromodomain inhibition.

Runcie, A.C.Zengerle, M.Chan, K.H.Testa, A.van Beurden, L.Baud, M.G.J.Epemolu, O.Ellis, L.C.J.Read, K.D.Coulthard, V.Brien, A.Ciulli, A.

(2018) Chem Sci 9: 2452-2468


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Bromodomain-containing protein 2
A
114Homo sapiensMutations: L42V
Gene Names: BRD2 (KIAA9001, RING3)
Find proteins for P25440 (Homo sapiens)
Go to Gene View: BRD2
Go to UniProtKB:  P25440
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
DQW
Query on DQW

Download SDF File 
Download CCD File 
A
(2~{S})-1-[(2~{S})-2-oxidanylpropoxy]propan-2-ol
C6 H14 O3
AZUXKVXMJOIAOF-WDSKDSINSA-N
 Ligand Interaction
CL
Query on CL

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Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
9JB
Query on 9JB

Download SDF File 
Download CCD File 
A
3-[(2~{R})-2-oxidanylpropoxy]-2-[[(2~{R})-2-oxidanylpropoxy]methyl]-2-[[(2~{S})-2-oxidanylpropoxy]methyl]propan-1-ol
C14 H30 O7
KKXXPTIHUVGGLQ-UPJWGTAASA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.141 
  • R-Value Work: 0.118 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 52.420α = 90.00
b = 71.409β = 90.00
c = 31.969γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
XDSdata reduction
PHENIXphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationCountryGrant Number
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/J001201/2
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/G023123/2
European Research CouncilERC-2012-StG-311460 DrugE3CRLs

Revision History 

  • Version 1.0: 2018-02-14
    Type: Initial release
  • Version 1.1: 2018-05-16
    Type: Data collection, Database references