5O33

A structure of the GEF Kalirin DH1 domain in complex with the small GTPase Rac1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.207 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

A structure of the GEF Kalirin DH1 domain in complex with the small GTPase Rac1

Gray, J.Krojer, T.Talon, R.Fairhead, M.Bountra, C.Arrowsmith, C.H.Edwards, A.Brennan, P.von Delft, F.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ras-related C3 botulinum toxin substrate 1
A
177Homo sapiensMutation(s): 0 
Gene Names: RAC1 (TC25)
Find proteins for P63000 (Homo sapiens)
Go to Gene View: RAC1
Go to UniProtKB:  P63000
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Kalirin
B
180Rattus norvegicusMutation(s): 0 
Gene Names: Kalrn (Duo, Hapip)
EC: 2.7.11.1
Find proteins for P97924 (Rattus norvegicus)
Go to UniProtKB:  P97924
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GDP
Query on GDP

Download SDF File 
Download CCD File 
A
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.207 
  • Space Group: P 65 2 2
Unit Cell:
Length (Å)Angle (°)
a = 63.255α = 90.00
b = 63.255β = 90.00
c = 346.704γ = 120.00
Software Package:
Software NamePurpose
PHENIXphasing
PHENIXrefinement
xia2data scaling
xia2data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-05-31
    Type: Initial release