5O0O
Deglycosylated Nogo Receptor with native disulfide structure 5
- PDB DOI: https://doi.org/10.2210/pdb5O0O/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Mus musculus
- Expression System: Homo sapiens
- Mutation(s): No 
- Deposited: 2017-05-16 Released: 2017-10-18 
- Funding Organization(s): NWO
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.207 
- R-Value Work: 0.167 
- R-Value Observed: 0.169 
This is version 1.5 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Reticulon-4 receptor | 323 | Mus musculus | Mutation(s): 0  Gene Names: Rtn4r, Ngr1, Nogor | ||
UniProt | |||||
Find proteins for Q99PI8 (Mus musculus) Explore Q99PI8  Go to UniProtKB:  Q99PI8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q99PI8 | ||||
Sequence AnnotationsExpand | |||||
|
Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | AA [auth B] AD [auth G] BA [auth B] BD [auth G] CA [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
GOL Query on GOL | DA [auth B] L [auth A] LB [auth D] M [auth A] MC [auth F] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
CL Query on CL | AB [auth C] AC [auth E] AE [auth H] BB [auth C] BC [auth E] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.207 
- R-Value Work: 0.167 
- R-Value Observed: 0.169 
- Space Group: P 41 21 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 168.49 | α = 90 |
b = 168.49 | β = 90 |
c = 256.18 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
iMOSFLM | data reduction |
Aimless | data scaling |
PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2017-10-18  Deposition Author(s): Pronker, M.F., Janssen, B.J.C.
Funding Organization | Location | Grant Number |
---|---|---|
NWO | Netherlands | Vidi 723.012.002 |
Revision History (Full details and data files)
- Version 1.0: 2017-10-18
Type: Initial release - Version 1.1: 2017-11-08
Changes: Database references - Version 1.2: 2017-11-15
Changes: Database references, Structure summary - Version 1.3: 2018-01-24
Changes: Source and taxonomy - Version 1.4: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.5: 2024-01-17
Changes: Data collection, Database references, Refinement description, Structure summary