5NZZ

Crystal structure of phosphorylated p38aMAPK in complex with TAB1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.219 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The TAB1-p38 alpha complex aggravates myocardial injury and can be targeted by small molecules.

De Nicola, G.F.Bassi, R.Nichols, C.Fernandez-Caggiano, M.Golforoush, P.A.Thapa, D.Anderson, R.Martin, E.D.Verma, S.Kleinjung, J.Laing, A.Hutchinson, J.P.Eaton, P.Clark, J.Marber, M.S.

(2018) JCI Insight 3: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
TGF-beta-activated kinase 1 and MAP3K7-binding protein 1
A, B, C, D
504Homo sapiensMutation(s): 0 
Gene Names: TAB1 (MAP3K7IP1)
Find proteins for Q15750 (Homo sapiens)
Go to Gene View: TAB1
Go to UniProtKB:  Q15750
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Mitogen-activated protein kinase 14
E, F, G, H
360Mus musculusMutation(s): 0 
Gene Names: Mapk14 (Crk1, Csbp1, Csbp2)
EC: 2.7.11.24
Find proteins for P47811 (Mus musculus)
Go to UniProtKB:  P47811
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download SDF File 
Download CCD File 
E, F, G, H
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
NI
Query on NI

Download SDF File 
Download CCD File 
A, B, C, D, E, F
NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
 Ligand Interaction
AGS
Query on AGS

Download SDF File 
Download CCD File 
E, F, G, H
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE
C10 H16 N5 O12 P3 S
NLTUCYMLOPLUHL-KQYNXXCUSA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
PTR
Query on PTR
E, F, G, H
L-PEPTIDE LINKINGC9 H12 N O6 PTYR
TPO
Query on TPO
E, F, G, H
L-PEPTIDE LINKINGC4 H10 N O6 PTHR
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.219 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 66.879α = 89.26
b = 107.632β = 76.75
c = 144.204γ = 84.28
Software Package:
Software NamePurpose
xia2data reduction
PHENIXrefinement
xia2data scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
BHFUnited KingdomBHF - FS/14/29/30896 - DE NICOLA

Revision History 

  • Version 1.0: 2018-05-30
    Type: Initial release
  • Version 1.1: 2018-09-19
    Type: Data collection, Database references