5NXJ | pdb_00005nxj

SH3 domain from Mouse cortactin (P 1 21 1 crystal form)

PDB DOI: https://doi.org/10.2210/pdb5NXJ/pdb

Classification: PROTEIN BINDING
Organism(s): Mus musculus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2017-05-10 Released: 2018-05-30
Deposition Author(s): Twafra, S., Dessau, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.28 Å
R-Value Free:
0.248 (Depositor), 0.250 (DCC)
R-Value Work:
0.198 (Depositor), 0.200 (DCC)
R-Value Observed:
0.200 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

SH3 domain from Mouse cortactin (P 1 21 1 crystal form)

Twafra, S., Gil-Henn, H., Dessau, M.

To be published.

Macromolecule Content

Total Structure Weight: 40.94 kDa
Atom Count: 3,047
Modeled Residue Count: 360
Deposited Residue Count: 360
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Src substrate cortactin	A, B, C, D, E A, B, C, D, E, F	60	Mus musculus	Mutation(s): 0 Gene Names: Cttn, Ems1
UniProt & NIH Common Fund Data Resources
Find proteins for Q60598 (Mus musculus) Explore Q60598 Go to UniProtKB: Q60598
IMPC: MGI:99695
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q60598
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
IPA Query on IPA Download Ideal Coordinates CCD File SDF format, chain H [auth D] SDF format, chain G [auth C] MOL2 format, chain H [auth D] MOL2 format, chain G [auth C] mmCIF format, chain H [auth D] mmCIF format, chain G [auth C]	G [auth C], H [auth D]	ISOPROPYL ALCOHOL C₃ H₈ O KFZMGEQAYNKOFK-UHFFFAOYSA-N		Interactions Focus chain G [auth C] Focus chain H [auth D] Interactions & Density Focus chain G [auth C] Focus chain H [auth D]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.28 Å
R-Value Free: 0.248 (Depositor), 0.250 (DCC)
R-Value Work: 0.198 (Depositor), 0.200 (DCC)
R-Value Observed: 0.200 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 41.34	α = 90
b = 80.08	β = 99.64
c = 61.12	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XSCALE	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2018-05-30

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-05-30
Type: Initial release
Version 1.1: 2024-01-17
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.