5NXJ | pdb_00005nxj

SH3 domain from Mouse cortactin (P 1 21 1 crystal form)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d5nxjf1	All beta proteins	SH3-like barrel	SH3-domain	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
F	d5nxjf2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
E	d5nxje1	All beta proteins	SH3-like barrel	SH3-domain	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
E	d5nxje2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
D	d5nxjd1	All beta proteins	SH3-like barrel	SH3-domain	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
D	d5nxjd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
C	d5nxjc1	All beta proteins	SH3-like barrel	SH3-domain	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
C	d5nxjc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
B	d5nxjb1	All beta proteins	SH3-like barrel	SH3-domain	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
B	d5nxjb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d5nxja1	All beta proteins	SH3-like barrel	SH3-domain	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d5nxja2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	SH3-domain	8065193	3000153	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	SH3-domain	8065193	3000153	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	SH3-domain	8065193	3000153	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SH3-domain	8065193	3000153	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	SH3-domain	8065193	3000153	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	SH3-domain	8065193	3000153	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	DEAD	e5nxjF1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: DEAD	ECOD (v294.1)
E	DEAD	e5nxjE1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: DEAD	ECOD (v294.1)
D	DEAD	e5nxjD1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: DEAD	ECOD (v294.1)
C	DEAD	e5nxjC1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: DEAD	ECOD (v294.1)
B	DEAD	e5nxjB1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: DEAD	ECOD (v294.1)
A	Yippee-Mis18	e5nxjA1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Yippee-Mis18	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (utative)
E	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (utative)
D	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (utative)
C	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (utative)
B	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (utative)
A	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF14604	Variant SH3 domain (SH3_9)	Variant SH3 domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Src substrate cortactin	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding proline-rich region binding profilin binding Arp2/3 complex binding	chemotaxis positive regulation of locomotion regulation of biological process response to stimulus regulation of response to external stimulus biological regulation positive regulation of biological process response to external stimulus regulation of chemotaxis positive regulation of chemotaxis positive regulation of response to stimulus positive regulation of response to external stimulus taxis regulation of response to stimulus response to chemical chemotaxis positive regulation of locomotion regulation of biological process response to stimulus regulation of response to external stimulus biological regulation positive regulation of biological process response to external stimulus regulation of chemotaxis positive regulation of chemotaxis positive regulation of response to stimulus positive regulation of response to external stimulus taxis regulation of response to stimulus response to chemical regulation of locomotion locomotion cellular component organization organelle organization actin cytoskeleton organization actin filament-based process cellular process cellular component organization or biogenesis cytoskeleton organization cell migration cell motility regulation of cellular process regulation of cellular component organization cell projection organization regulation of cell projection assembly regulation of cell projection organization regulation of cellular component biogenesis cellular component biogenesis cellular component assembly cell projection assembly catabolic process macroautophagy autophagy regulation of mitophagy regulation of catabolic process regulation of autophagy regulation of macroautophagy mitophagy metabolic process regulation of autophagy of mitochondrion process utilizing autophagic mechanism regulation of metabolic process autophagy of mitochondrion focal adhesion assembly cell-substrate junction assembly cell-substrate adhesion cell adhesion cell junction organization cell-matrix adhesion cell junction assembly cell-substrate junction organization cellular response to stimulus signaling negative regulation of signaling negative regulation of biological process regulation of signal transduction regulation of programmed cell death extrinsic apoptotic signaling pathway negative regulation of cell communication negative regulation of extrinsic apoptotic signaling pathway cell communication negative regulation of apoptotic signaling pathway negative regulation of cellular process signal transduction regulation of signaling cell surface receptor signaling pathway negative regulation of response to stimulus negative regulation of programmed cell death regulation of apoptotic process cell death negative regulation of signal transduction regulation of extrinsic apoptotic signaling pathway apoptotic signaling pathway negative regulation of apoptotic process regulation of cell communication apoptotic process programmed cell death regulation of apoptotic signaling pathway localization import into cell transport receptor-mediated endocytosis endocytosis establishment of localization vesicle-mediated transport regulation of cytoskeleton organization regulation of actin filament-based process regulation of cellular component size regulation of protein-containing complex assembly protein-containing complex assembly regulation of actin filament polymerization regulation of biological quality protein polymerization actin polymerization or depolymerization regulation of actin filament organization actin filament polymerization protein-containing complex organization regulation of actin polymerization or depolymerization actin filament organization regulation of organelle organization regulation of protein polymerization regulation of actin filament length regulation of actin cytoskeleton organization regulation of supramolecular fiber organization supramolecular fiber organization regulation of anatomical structure size synapse organization modification of postsynaptic structure modification of synaptic structure plasma membrane bounded cell projection organization lamellipodium organization substrate-dependent cell migration, cell extension plasma membrane bounded cell projection assembly substrate-dependent cell migration multicellular organismal process cellular developmental process plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development system development developmental process nervous system development generation of neurons anatomical structure morphogenesis neuron development axon extension regulation of growth axonogenesis developmental growth developmental growth involved in morphogenesis regulation of developmental process cell growth regulation of axon extension regulation of extent of cell growth regulation of cell size neuron projection extension regulation of developmental growth developmental cell growth growth axon development regulation of cell growth cell morphogenesis involved in neuron differentiation modification of postsynaptic actin cytoskeleton cellular localization establishment of protein localization intracellular transport protein transport establishment of localization in cell macromolecule localization intracellular protein localization intracellular protein transport dendritic spine maintenance dendritic spine organization postsynapse organization cellular component maintenance neuron projection organization positive regulation of organelle organization positive regulation of cellular component organization positive regulation of protein-containing complex assembly positive regulation of protein polymerization positive regulation of cellular process positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization positive regulation of supramolecular fiber organization positive regulation of actin filament polymerization system process positive regulation of smooth muscle contraction regulation of system process muscle contraction muscle system process regulation of muscle system process smooth muscle contraction regulation of muscle contraction regulation of smooth muscle contraction positive regulation of muscle contraction positive regulation of multicellular organismal process regulation of multicellular organismal process	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium clathrin-coated pit membrane endomembrane system intracellular organelle intracellular anatomical structure podosome cytoskeleton organelle membraneless organelle cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium clathrin-coated pit membrane endomembrane system intracellular organelle intracellular anatomical structure podosome cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cytosol synapse cell junction glutamatergic synapse membrane-bounded organelle Golgi apparatus intracellular membrane-bounded organelle site of polarized growth neuron spine neuron projection dendritic spine somatodendritic compartment postsynapse dendrite dendritic tree ruffle mitotic spindle spindle mitotic spindle midzone spindle midzone microtubule cytoskeleton polymeric cytoskeletal fiber actin filament supramolecular fiber supramolecular polymer supramolecular complex cell cortex cortical cytoskeleton cell periphery anchoring junction focal adhesion cell-substrate junction postsynaptic cytoskeleton postsynaptic actin cytoskeleton plasma membrane growth cone axon distal axon voltage-gated potassium channel complex protein-containing complex plasma membrane protein complex potassium channel complex membrane protein complex cation channel complex transporter complex transmembrane transporter complex monoatomic ion channel complex cortical actin cytoskeleton endoplasmic reticulum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR036028	SH3-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR001452	SH3 domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR003134	Hs1/Cortactin	Repeat
A, B, C, D, E A, B, C, D, E, F	IPR035716	Cortactin, SH3 domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.