5NVJ | pdb_00005nvj

SH3 domain from Mouse cortactin (C 1 2 1 crystal form)

• PDB DOI: https://doi.org/10.2210/pdb5NVJ/pdb

• Classification: SIGNALING PROTEIN
• Organism(s): Mus musculus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2017-05-04 Released: 2018-08-15 
• Deposition Author(s): Twafra, S., Dessau, M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.18 Å
• R-Value Free: 
  0.201 (Depositor), 0.200 (DCC) 
• R-Value Work: 
  0.189 (Depositor), 0.200 (DCC) 

Starting Model: experimental

Literature

SH3 domain from Mouse cortactin (C 1 2 1 crystal form)

Twafra, S., Gil-Henn, H., Dessau, M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 14.13 kDa 
• Atom Count: 1,157 
• Modeled Residue Count: 120 
• Deposited Residue Count: 120 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Src substrate cortactin	A, B	60	Mus musculus	Mutation(s): 0  Gene Names: Cttn, Ems1
UniProt & NIH Common Fund Data Resources
Find proteins for Q60598 (Mus musculus) Explore Q60598  Go to UniProtKB:  Q60598
IMPC:  MGI:99695

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CIT	E [auth A]	CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N
BEN	C [auth A], F [auth B]	BENZAMIDINE C7 H8 N2 PXXJHWLDUBFPOL-UHFFFAOYSA-N
GOL	D [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.18 Å
• R-Value Free:  0.201 (Depositor), 0.200 (DCC) 
• R-Value Work:  0.189 (Depositor), 0.200 (DCC) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 76.61	α = 90
b = 35.43	β = 135.9
c = 64.3	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
SCALA	data scaling
PDB_EXTRACT	data extraction
d*TREK	data reduction
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2018-08-15 
Deposition Author(s): Twafra, S., Dessau, M.

Revision History  

• Version 1.0: 2018-08-15
  Type: Initial release
  
• Version 2.0: 2021-08-04
  Changes: Advisory, Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary
• Version 2.1: 2024-01-17
  Changes: Data collection, Database references, Refinement description