5NR8

Crystal structure of human chitotriosidase-1 (hCHIT) catalytic domain in complex with compound 7a


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Targeting Acidic Mammalian chitinase Is Effective in Animal Model of Asthma.

Mazur, M.Olczak, J.Olejniczak, S.Koralewski, R.Czestkowski, W.Jedrzejczak, A.Golab, J.Dzwonek, K.Dymek, B.Sklepkiewicz, P.L.Zagozdzon, A.Noonan, T.Mahboubi, K.Conway, B.Sheeler, R.Beckett, P.Hungerford, W.M.Podjarny, A.Mitschler, A.Cousido-Siah, A.Fadel, F.Golebiowski, A.

(2018) J Med Chem 61: 695-710

  • DOI: https://doi.org/10.1021/acs.jmedchem.7b01051
  • Primary Citation of Related Structures:  
    5NR8, 5NRA, 5NRF

  • PubMed Abstract: 

    This article highlights our work toward the identification of a potent, selective, and efficacious acidic mammalian chitinase (AMCase) inhibitor. Rational design, guided by X-ray analysis of several inhibitors bound to human chitotriosidase (hCHIT1), led to the identification of compound 7f as a highly potent AMCase inhibitor (IC 50 values of 14 and 19 nM against human and mouse enzyme, respectively) and selective (>150× against mCHIT1) with very good PK properties. This compound dosed once daily at 30 mg/kg po showed significant anti-inflammatory efficacy in HDM-induced allergic airway inflammation in mice, reducing inflammatory cell influx in the BALF and total IgE concentration in plasma, which correlated with decrease of chitinolytic activity. Therapeutic efficacy of compound 7f in the clinically relevant aeroallergen-induced acute asthma model in mice provides a rationale for developing AMCase inhibitor for the treatment of asthma.


  • Organizational Affiliation

    OncoArendi Therapeutics SA , Żwirki i Wigury 101, 02-089 Warsaw, Poland.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Chitotriosidase-1377Homo sapiensMutation(s): 0 
Gene Names: CHIT1
EC: 3.2.1.14
UniProt & NIH Common Fund Data Resources
Find proteins for Q13231 (Homo sapiens)
Explore Q13231 
Go to UniProtKB:  Q13231
PHAROS:  Q13231
GTEx:  ENSG00000133063 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ13231
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Binding Affinity Annotations 
IDSourceBinding Affinity
95N BindingDB:  5NR8 IC50: 175 (nM) from 1 assay(s)
Binding MOAD:  5NR8 IC50: 175 (nM) from 1 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 85.897α = 90
b = 106.006β = 90
c = 42.158γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PHENIXrefinement
HKL-2000data reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-02-21
    Type: Initial release
  • Version 1.1: 2019-10-16
    Changes: Data collection