5NP5

Abl2 SH3 pTyr116/161


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.172 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural insights into the tyrosine phosphorylation-mediated inhibition of SH3 domain-ligand interactions.

Mero, B.Radnai, L.Gogl, G.Toke, O.Leveles, I.Koprivanacz, K.Szeder, B.Dulk, M.Kudlik, G.Vas, V.Cserkaszky, A.Sipeki, S.Nyitray, L.Vertessy, B.G.Buday, L.

(2019) J.Biol.Chem. 294: 4608-4620


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Abelson tyrosine-protein kinase 2
A, B
61Homo sapiensMutation(s): 0 
Gene Names: ABL2 (ABLL, ARG)
EC: 2.7.10.2
Find proteins for P42684 (Homo sapiens)
Go to Gene View: ABL2
Go to UniProtKB:  P42684
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
PTR
Query on PTR
A, B
L-PEPTIDE LINKINGC9 H12 N O6 PTYR
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.172 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 22.510α = 90.00
b = 45.910β = 89.74
c = 45.770γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
PHASERphasing
PHENIXrefinement
XDSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-05-16
    Type: Initial release
  • Version 1.1: 2019-01-30
    Type: Data collection, Database references
  • Version 1.2: 2019-04-03
    Type: Data collection, Database references