5NI3

sfGFP 204-204 mutant dimer


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.28 Å
  • R-Value Free: 0.191 
  • R-Value Work: 0.174 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

sfGFP 204-204 mutant dimer

Worthy, H.L.Rizkallah, P.J.Pope, J.Jones, D.D.Watkins, D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Green fluorescent protein
A
227Aequorea victoriaMutation(s): 1 
Gene Names: gfp
Find proteins for A0A059PIQ0 (Aequorea victoria)
Go to UniProtKB:  A0A059PIQ0
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Green fluorescent protein
B
231Aequorea victoriaMutation(s): 1 
Gene Names: gfp
Find proteins for A0A059PIQ0 (Aequorea victoria)
Go to UniProtKB:  A0A059PIQ0
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Green fluorescent protein
C, D
231Aequorea victoriaMutation(s): 0 
Gene Names: gfp
Find proteins for A0A059PIQ0 (Aequorea victoria)
Go to UniProtKB:  A0A059PIQ0
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A, B, C, D
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

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Download CCD File 
C
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
GOL
Query on GOL

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Download CCD File 
B, C, D
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
DB5
Query on DB5

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Download CCD File 
A, B
[(4~{S})-4,5,6,7,8,9-hexahydro-1~{H}-cycloocta[d][1,2,3]triazol-4-yl] hydrogen carbonate
C9 H13 N3 O3
ZBJGIWFCJONVKZ-ZETCQYMHSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
CRO
Query on CRO
A, B, C, D
L-PEPTIDE LINKINGC15 H17 N3 O5THR, TYR, GLY
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.28 Å
  • R-Value Free: 0.191 
  • R-Value Work: 0.174 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 96.700α = 90.00
b = 98.020β = 90.00
c = 102.640γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
REFMACrefinement
Aimlessdata scaling
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-09-12
    Type: Initial release