5NAX

Crystal structures of homooligomers of the non-collagenous domains of collagen type IV. alpha121NC1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.82 Å
  • R-Value Free: 0.185 
  • R-Value Work: 0.141 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structures of collagen IV globular domains: insight into associated pathologies, folding and network assembly.

Casino, P.Gozalbo-Rovira, R.Rodriguez-Diaz, J.Banerjee, S.Boutaud, A.Rubio, V.Hudson, B.G.Saus, J.Cervera, J.Marina, A.

(2018) IUCrJ 5: 765-779


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Collagen alpha-1(IV) chain
A, B, D, F
229Homo sapiensMutation(s): 0 
Gene Names: COL4A1
Find proteins for P02462 (Homo sapiens)
Go to Gene View: COL4A1
Go to UniProtKB:  P02462
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Collagen alpha-2(IV) chain
C, E
228Homo sapiensMutation(s): 0 
Gene Names: COL4A2
Find proteins for P08572 (Homo sapiens)
Go to Gene View: COL4A2
Go to UniProtKB:  P08572
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A, B, C, D, E, F
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.82 Å
  • R-Value Free: 0.185 
  • R-Value Work: 0.141 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 126.148α = 90.00
b = 126.148β = 90.00
c = 216.211γ = 120.00
Software Package:
Software NamePurpose
SCALAdata scaling
PDB_EXTRACTdata extraction
PHASERphasing
PHASERphasing
REFMACrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2017-02-28 
  • Released Date: 2018-09-12 
  • Deposition Author(s): Casino, P., Marina, A.

Funding OrganizationLocationGrant Number
Spanish Ministry of Economy and CompetitivenessSpainBIO2013-42619-P
Spanish Ministry of Economy and CompetitivenessSpainBFU2016-78606-P
European UnionSpainFP7/2007-2013

Revision History 

  • Version 1.0: 2018-09-12
    Type: Initial release
  • Version 1.1: 2018-10-24
    Type: Data collection, Database references
  • Version 1.2: 2018-11-28
    Type: Data collection, Database references