5N80

glycosyltransferase LPS biosynthesis in complex with UDP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.92 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.239 

wwPDB Validation 3D Report Full Report


This is version 2.0 of the entry. See complete history

Literature

glycosyltransferase LPS biosynthesis in complex with UDP

ZHANG, Z.Ashworth, G.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Lipopolysaccharide 1,6-galactosyltransferase
A
360Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)Mutation(s): 0 
Gene Names: rfaB (waaB)
EC: 2.4.1.-
Find proteins for Q06994 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
Go to UniProtKB:  Q06994
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UDP
Query on UDP

Download SDF File 
Download CCD File 
A
URIDINE-5'-DIPHOSPHATE
C9 H14 N2 O12 P2
XCCTYIAWTASOJW-XVFCMESISA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.92 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.239 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 104.440α = 90.00
b = 104.440β = 90.00
c = 89.640γ = 90.00
Software Package:
Software NamePurpose
xia2data collection
xia2data scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-03-14
    Type: Initial release
  • Version 2.0: 2018-04-25
    Type: Atomic model, Data collection, Database references, Derived calculations, Polymer sequence, Refinement description, Source and taxonomy, Structure summary